Regression Metrics eFDR Plots

Regression Metrics Report

Versions: v0.6.4, v0.6.7, v0.7.0, v0.7.4, develop, current

Metric: identification.precursors.total

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop	% current vs v0.6.4	% current vs v0.6.7	% current vs v0.7.0	% current vs v0.7.4	% current vs develop
APMS_Astral	5499336	7773512	7737757	6228907	6253241	6228907	+729571	-1544605	-1508850	+0	-24334	+13.2665%	-19.8701%	-19.4998%	+0%	-0.3891%
KEAP1KO_Eclipse	1096494	1307005	1311955	1293541	1293541	1293541	+197047	-13464	-18414	+0	+0	+17.9706%	-1.0301%	-1.4036%	+0%	+0%
MTAC_3P_Alternating	586322	615762	610710	599881	599881	599881	+13559	-15881	-10829	+0	+0	+2.3126%	-2.5791%	-1.7732%	+0%	+0%
MTAC_3P_Standard	596590	623022	617574	607435	607435	607435	+10845	-15587	-10139	+0	+0	+1.8178%	-2.5018%	-1.6417%	+0%	+0%
MTAC_Yeast_Alternating_3min		137548	136839	135560	135560	135560		-1988	-1279	+0	+0		-1.4453%	-0.9347%	+0%	+0%
MTAC_Yeast_Alternating_5min	155641	156551	156509	155035	155401	154536	-1105	-2015	-1973	-499	-865	-0.7100%	-1.2871%	-1.2606%	-0.3219%	-0.5566%
MTAC_Yeast_Standard_3min	138509	139385	139292	137885	137787	137787	-722	-1598	-1505	-98	+0	-0.5213%	-1.1465%	-1.0805%	-0.0711%	+0%
MTAC_Yeast_Standard_5min	158962	158732	159160	157922	157922	157922	-1040	-810	-1238	+0	+0	-0.6542%	-0.5103%	-0.7778%	+0%	+0%
Olsen_Astral_3P	3282083	3760832	3714135	3638372	3638372	3638372	+356289	-122460	-75763	+0	+0	+10.8556%	-3.2562%	-2.0399%	+0%	+0%
Olsen_Exploris_3P	1022736	1154669	1123873	1184084	1184084	1184084	+161348	+29415	+60211	+0	+0	+15.7761%	+2.5475%	+5.3575%	+0%	+0%
SCIEX_3P	672242	749525	722698	714454	714454	714454	+42212	-35071	-8244	+0	+0	+6.2793%	-4.6791%	-1.1407%	+0%	+0%
SCP_Astral_1000pg_12ms	40882	41700	42425	42100	42100	42100	+1218	+400	-325	+0	+0	+2.9793%	+0.9592%	-0.7661%	+0%	+0%
SCP_Astral_1000pg_24ms	41069	42402	42023	41152	41152	41152	+83	-1250	-871	+0	+0	+0.2021%	-2.9480%	-2.0727%	+0%	+0%
SCP_Astral_1000pg_3ms	8740	23115	23015	22913	22913	22913	+14173	-202	-102	+0	+0	+162.1625%	-0.8739%	-0.4432%	+0%	+0%
SCP_Astral_1000pg_6ms	16935	17553	18409	18348	18348	18348	+1413	+795	-61	+0	+0	+8.3437%	+4.5291%	-0.3314%	+0%	+0%
SCP_Astral_10ng_12ms	99908	102891	98983	98648	98648	98648	-1260	-4243	-335	+0	+0	-1.2612%	-4.1238%	-0.3384%	+0%	+0%
SCP_Astral_10ng_24ms	71098	72728	71445	71126	71126	71126	+28	-1602	-319	+0	+0	+0.0394%	-2.2027%	-0.4465%	+0%	+0%
SCP_Astral_10ng_6ms	115157	117316	114322	113081	113392	113250	-1907	-4066	-1072	+169	-142	-1.6560%	-3.4659%	-0.9377%	+0.1495%	-0.1252%
SCP_Astral_10ng_ms	105704	106497	105622	104434	104512	104512	-1192	-1985	-1110	+78	+0	-1.1277%	-1.8639%	-1.0509%	+0.0747%	+0%
SCP_Astral_250pg_12ms	10194	10806	11238	11233	11233	11233	+1039	+427	-5	+0	+0	+10.1923%	+3.9515%	-0.0445%	+0%	+0%
SCP_Astral_250pg_24ms	14807	15433	16041	15699	15699	15699	+892	+266	-342	+0	+0	+6.0242%	+1.7236%	-2.1320%	+0%	+0%
SCP_Astral_250pg_3ms	1261	2032	2450	2386	2386	2386	+1125	+354	-64	+0	+0	+89.2149%	+17.4213%	-2.6122%	+0%	+0%
SCP_Astral_250pg_6ms	1436	4783	5690	5731	5731	5731	+4295	+948	+41	+0	+0	+299.0947%	+19.8202%	+0.7206%	+0%	+0%
SCP_Astral_500pg_12ms	21710	21895	22580	22463	22463	22463	+753	+568	-117	+0	+0	+3.4684%	+2.5942%	-0.5182%	+0%	+0%
SCP_Astral_500pg_24ms	25860	26143	26260	25625	25625	25625	-235	-518	-635	+0	+0	-0.9087%	-1.9814%	-2.4181%	+0%	+0%
SCP_Astral_500pg_3ms	3484		6898	6834	6834	6834	+3350		-64	+0	+0	+96.1538%		-0.9278%	+0%	+0%
SCP_Astral_500pg_6ms	10699	11474	12882	12889	12889	12889	+2190	+1415	+7	+0	+0	+20.4692%	+12.3322%	+0.0543%	+0%	+0%
SCP_Astral_MBR	92167	93585	91884	90864	90838	90759	-1408	-2826	-1125	-105	-79	-1.5277%	-3.0197%	-1.2244%	-0.1156%	-0.0870%
Seer_Astral_45	2512737	3124006	3135497	2971207	2970421	2971207	+458470	-152799	-164290	+0	+786	+18.2458%	-4.8911%	-5.2397%	+0%	+0.0265%
Seer_Astral_single		56699	55793	55891	55891	55891		-808	+98	+0	+0		-1.4251%	+0.1756%	+0%	+0%
YEAST_KO_Astral	16088274	20393787	19199790	17613446	17648311	17635856	+1547582	-2757931	-1563934	+22410	-12455	+9.6193%	-13.5234%	-8.1456%	+0.1272%	-0.0706%
EWZ_2P_MBR_Exploris	1662994	1805470	1794012		1775346
EWZ_2P_MBR_Exploris				1776128		1775346				-782					-0.0440%
EWZ_2P_MBR_Exploris_Human				836809		836809				+0					+0%
EWZ_2P_MBR_Exploris_YeastHuman				914924		913949				-975					-0.1066%
EWZ_2P_noMBR_Exploris	1608906	1770319	1769221		1775346
MacCoss_Eclipse_Normalization_noNorm				2078034		2078034				+0					+0%
MacCoss_Eclipse_Normalization_yesNorm				2078034		2078034				+0					+0%

Metric: identification.precursors.unique

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop	% current vs v0.6.4	% current vs v0.6.7	% current vs v0.7.0	% current vs v0.7.4	% current vs develop
APMS_Astral	246168	430774	397213	348933	355853	348933	+102765	-81841	-48280	+0	-6920	+41.7459%	-18.9986%	-12.1547%	+0%	-1.9446%
KEAP1KO_Eclipse	111504	133619	131359	132031	132031	132031	+20527	-1588	+672	+0	+0	+18.4092%	-1.1885%	+0.5116%	+0%	+0%
MTAC_3P_Alternating	108267	117352	114659	114816	114816	114816	+6549	-2536	+157	+0	+0	+6.0489%	-2.1610%	+0.1369%	+0%	+0%
MTAC_3P_Standard	110265	118693	115800	116148	116148	116148	+5883	-2545	+348	+0	+0	+5.3353%	-2.1442%	+0.3005%	+0%	+0%
MTAC_Yeast_Alternating_3min		48858	49032	48995	48995	48995		+137	-37	+0	+0		+0.2804%	-0.0755%	+0%	+0%
MTAC_Yeast_Alternating_5min	53969	55075	55840	55884	56132	55641	+1672	+566	-199	-243	-491	+3.0981%	+1.0277%	-0.3564%	-0.4348%	-0.8747%
MTAC_Yeast_Standard_3min	48621	49665	50289	50460	50415	50415	+1794	+750	+126	-45	+0	+3.6898%	+1.5101%	+0.2506%	-0.0892%	+0%
MTAC_Yeast_Standard_5min	55060	55919	56707	56827	56827	56827	+1767	+908	+120	+0	+0	+3.2092%	+1.6238%	+0.2116%	+0%	+0%
Olsen_Astral_3P	198770	231103	234505	234149	234149	234149	+35379	+3046	-356	+0	+0	+17.7990%	+1.3180%	-0.1518%	+0%	+0%
Olsen_Exploris_3P	51272	58784	55047	58593	58593	58593	+7321	-191	+3546	+0	+0	+14.2787%	-0.3249%	+6.4418%	+0%	+0%
SCIEX_3P	82206	93920	87927	87858	87858	87858	+5652	-6062	-69	+0	+0	+6.8754%	-6.4544%	-0.0785%	+0%	+0%
SCP_Astral_1000pg_12ms	14440	14958	15249	15707	15707	15707	+1267	+749	+458	+0	+0	+8.7742%	+5.0074%	+3.0035%	+0%	+0%
SCP_Astral_1000pg_24ms	14483	15065	14916	15070	15070	15070	+587	+5	+154	+0	+0	+4.0530%	+0.0332%	+1.0324%	+0%	+0%
SCP_Astral_1000pg_3ms	8740	9376	9389	9364	9364	9364	+624	-12	-25	+0	+0	+7.1396%	-0.1280%	-0.2663%	+0%	+0%
SCP_Astral_1000pg_6ms	8898	9259	9784	9810	9810	9810	+912	+551	+26	+0	+0	+10.2495%	+5.9510%	+0.2657%	+0%	+0%
SCP_Astral_10ng_12ms	34865	36297	34342	34425	34425	34425	-440	-1872	+83	+0	+0	-1.2620%	-5.1575%	+0.2417%	+0%	+0%
SCP_Astral_10ng_24ms	24649	25466	25119	25223	25223	25223	+574	-243	+104	+0	+0	+2.3287%	-0.9542%	+0.4140%	+0%	+0%
SCP_Astral_10ng_6ms	40156	41545	40043	39893	40026	39946	-210	-1599	-97	+53	-80	-0.5230%	-3.8488%	-0.2422%	+0.1329%	-0.1999%
SCP_Astral_10ng_ms	36688	37676	37649	37421	37457	37457	+769	-219	-192	+36	+0	+2.0961%	-0.5813%	-0.5100%	+0.0962%	+0%
SCP_Astral_250pg_12ms	3666	3949	4209	4246	4246	4246	+580	+297	+37	+0	+0	+15.8211%	+7.5209%	+0.8791%	+0%	+0%
SCP_Astral_250pg_24ms	5299	5611	5855	6066	6066	6066	+767	+455	+211	+0	+0	+14.4744%	+8.1091%	+3.6038%	+0%	+0%
SCP_Astral_250pg_3ms	675	721	908	879	879	879	+204	+158	-29	+0	+0	+30.2222%	+21.9140%	-3.1938%	+0%	+0%
SCP_Astral_250pg_6ms	1436	1738	2145	2163	2163	2163	+727	+425	+18	+0	+0	+50.6267%	+24.4534%	+0.8392%	+0%	+0%
SCP_Astral_500pg_12ms	7794	7972	8252	8406	8406	8406	+612	+434	+154	+0	+0	+7.8522%	+5.4441%	+1.8662%	+0%	+0%
SCP_Astral_500pg_24ms	9158	9342	9371	9414	9414	9414	+256	+72	+43	+0	+0	+2.7954%	+0.7707%	+0.4589%	+0%	+0%
SCP_Astral_500pg_3ms	1846		2600	2586	2586	2586	+740		-14	+0	+0	+40.0867%		-0.5385%	+0%	+0%
SCP_Astral_500pg_6ms	3874	4155	4774	4805	4805	4805	+931	+650	+31	+0	+0	+24.0320%	+15.6438%	+0.6494%	+0%	+0%
SCP_Astral_MBR	24110	24991	24570	24544	24526	24538	+428	-453	-32	-6	+12	+1.7752%	-1.8127%	-0.1302%	-0.0244%	+0.0489%
Seer_Astral_45	69584	90103	87204	87620	87511	87620	+18036	-2483	+416	+0	+109	+25.9198%	-2.7557%	+0.4770%	+0%	+0.1246%
Seer_Astral_single		56699	55793	55891	55891	55891		-808	+98	+0	+0		-1.4251%	+0.1756%	+0%	+0%
YEAST_KO_Astral	66823	87888	87428	86498	86437	86417	+19594	-1471	-1011	-81	-20	+29.3222%	-1.6737%	-1.1564%	-0.0936%	-0.0231%
EWZ_2P_MBR_Exploris	50700	56145	54665		55147
EWZ_2P_MBR_Exploris				55271		55147				-124					-0.2243%
EWZ_2P_MBR_Exploris_Human				48465		48465				+0					+0%
EWZ_2P_MBR_Exploris_YeastHuman				51246		51177				-69					-0.1346%
EWZ_2P_noMBR_Exploris	50591	56328	55060		55147
MacCoss_Eclipse_Normalization_noNorm				73278		73278				+0					+0%
MacCoss_Eclipse_Normalization_yesNorm				73278		73278				+0					+0%

Metric: identification.protein_groups.total

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop	% current vs v0.6.4	% current vs v0.6.7	% current vs v0.7.0	% current vs v0.7.4	% current vs develop
APMS_Astral	603278	724941	730564	637465	648553	667914	+64636	-57027	-62650	+30449	+19361	+10.7141%	-7.8664%	-8.5756%	+4.7766%	+2.9853%
KEAP1KO_Eclipse	87920	92888	93982	93441	93441	94641	+6721	+1753	+659	+1200	+1200	+7.6444%	+1.8872%	+0.7012%	+1.2842%	+1.2842%
MTAC_3P_Alternating	63773	63974	63611	63015	63015	65828	+2055	+1854	+2217	+2813	+2813	+3.2224%	+2.8981%	+3.4852%	+4.4640%	+4.4640%
MTAC_3P_Standard	64317	64464	64219	63385	63385	65989	+1672	+1525	+1770	+2604	+2604	+2.5996%	+2.3657%	+2.7562%	+4.1082%	+4.1082%
MTAC_Yeast_Alternating_3min		12067	11970	11940	11940	12278		+211	+308	+338	+338		+1.7486%	+2.5731%	+2.8308%	+2.8308%
MTAC_Yeast_Alternating_5min	12432	12471	12362	12328	12335	12709	+277	+238	+347	+381	+374	+2.2281%	+1.9084%	+2.8070%	+3.0905%	+3.0320%
MTAC_Yeast_Standard_3min	12008	12047	11960	11968	11933	12154	+146	+107	+194	+186	+221	+1.2159%	+0.8882%	+1.6221%	+1.5541%	+1.8520%
MTAC_Yeast_Standard_5min	12561	12465	12477	12410	12410	12775	+214	+310	+298	+365	+365	+1.7037%	+2.4870%	+2.3884%	+2.9412%	+2.9412%
Olsen_Astral_3P	236395	245756	242430	240719	240719	246278	+9883	+522	+3848	+5559	+5559	+4.1807%	+0.2124%	+1.5873%	+2.3093%	+2.3093%
Olsen_Exploris_3P	146224	153534	153990	155827	155827	157086	+10862	+3552	+3096	+1259	+1259	+7.4283%	+2.3135%	+2.0105%	+0.8079%	+0.8079%
SCIEX_3P	70810	74366	72157	71550	71550	73236	+2426	-1130	+1079	+1686	+1686	+3.4261%	-1.5195%	+1.4954%	+2.3564%	+2.3564%
SCP_Astral_1000pg_12ms	9163	9528	9585	9334	9334	10040	+877	+512	+455	+706	+706	+9.5711%	+5.3736%	+4.7470%	+7.5637%	+7.5637%
SCP_Astral_1000pg_24ms	9298	9761	9412	9553	9553	9982	+684	+221	+570	+429	+429	+7.3564%	+2.2641%	+6.0561%	+4.4907%	+4.4907%
SCP_Astral_1000pg_3ms	2450	6084	6247	6116	6116	6280	+3830	+196	+33	+164	+164	+156.3265%	+3.2216%	+0.5283%	+2.6815%	+2.6815%
SCP_Astral_1000pg_6ms	4703	4588	4958	4923	4923	5023	+320	+435	+65	+100	+100	+6.8042%	+9.4813%	+1.3110%	+2.0313%	+2.0313%
SCP_Astral_10ng_12ms	16190	16280	16025	16055	16055	16577	+387	+297	+552	+522	+522	+2.3904%	+1.8243%	+3.4446%	+3.2513%	+3.2513%
SCP_Astral_10ng_24ms	13599	13841	13688	13671	13671	14005	+406	+164	+317	+334	+334	+2.9855%	+1.1849%	+2.3159%	+2.4431%	+2.4431%
SCP_Astral_10ng_6ms	17017	17178	16913	16745	16777	17455	+438	+277	+542	+710	+678	+2.5739%	+1.6125%	+3.2046%	+4.2401%	+4.0412%
SCP_Astral_10ng_ms	16252	16276	16117	15925	15961	16374	+122	+98	+257	+449	+413	+0.7507%	+0.6021%	+1.5946%	+2.8195%	+2.5876%
SCP_Astral_250pg_12ms	3647	3913	3864	3539	3539	3770	+123	-143	-94	+231	+231	+3.3726%	-3.6545%	-2.4327%	+6.5273%	+6.5273%
SCP_Astral_250pg_24ms	4300	4603	4797	4977	4977	5146	+846	+543	+349	+169	+169	+19.6744%	+11.7967%	+7.2754%	+3.3956%	+3.3956%
SCP_Astral_250pg_3ms	576	22	936	741	741	741	+165	+719	-195	+0	+0	+28.6458%	+3268.1818%	-20.8333%	+0%	+0%
SCP_Astral_250pg_6ms	637	2080	2029	2046	2046	2046	+1409	-34	+17	+0	+0	+221.1931%	-1.6346%	+0.8379%	+0%	+0%
SCP_Astral_500pg_12ms	6245	6346	6016	6127	6127	6246	+1	-100	+230	+119	+119	+0.0160%	-1.5758%	+3.8231%	+1.9422%	+1.9422%
SCP_Astral_500pg_24ms	6722	6729	7012	7023	7023	7339	+617	+610	+327	+316	+316	+9.1788%	+9.0652%	+4.6634%	+4.4995%	+4.4995%
SCP_Astral_500pg_3ms	982		2365	2177	2177	1974	+992		-391	-203	-203	+101.0183%		-16.5328%	-9.3248%	-9.3248%
SCP_Astral_500pg_6ms	3708	4007	4045	3918	3918	3882	+174	-125	-163	-36	-36	+4.6926%	-3.1195%	-4.0297%	-0.9188%	-0.9188%
SCP_Astral_MBR	20165	20129	20074	19793	19851	20422	+257	+293	+348	+629	+571	+1.2745%	+1.4556%	+1.7336%	+3.1779%	+2.8764%
Seer_Astral_45	225377	241455	241952	237727	237529	244866	+19489	+3411	+2914	+7139	+7337	+8.6473%	+1.4127%	+1.2044%	+3.0030%	+3.0889%
Seer_Astral_single		4685	4700	4632	4632	4712		+27	+12	+80	+80		+0.5763%	+0.2553%	+1.7271%	+1.7271%
YEAST_KO_Astral	1300836	1388263	1327464	1301700	1306693	1350146	+49310	-38117	+22682	+48446	+43453	+3.7906%	-2.7457%	+1.7087%	+3.7217%	+3.3254%
EWZ_2P_MBR_Exploris	239484	246184	245112		244993
EWZ_2P_MBR_Exploris				245259		247632				+2373					+0.9675%
EWZ_2P_MBR_Exploris_Human				115447		116770				+1323					+1.1460%
EWZ_2P_MBR_Exploris_YeastHuman				128968		130429				+1461					+1.1328%
EWZ_2P_noMBR_Exploris	235990	244737	245013		244993
MacCoss_Eclipse_Normalization_noNorm				178174		181859				+3685					+2.0682%
MacCoss_Eclipse_Normalization_yesNorm				178174		181859				+3685					+2.0682%

Metric: identification.protein_groups.unique

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop	% current vs v0.6.4	% current vs v0.6.7	% current vs v0.7.0	% current vs v0.7.4	% current vs develop
APMS_Astral	21740	28540	27527	26397	26807	26683	+4943	-1857	-844	+286	-124	+22.7369%	-6.5067%	-3.0661%	+1.0835%	-0.4626%
KEAP1KO_Eclipse	7845	8175	8155	8203	8203	8171	+326	-4	+16	-32	-32	+4.1555%	-0.0489%	+0.1962%	-0.3901%	-0.3901%
MTAC_3P_Alternating	11361	11494	11351	11338	11338	11804	+443	+310	+453	+466	+466	+3.8993%	+2.6971%	+3.9908%	+4.1101%	+4.1101%
MTAC_3P_Standard	11473	11560	11477	11396	11396	11832	+359	+272	+355	+436	+436	+3.1291%	+2.3529%	+3.0931%	+3.8259%	+3.8259%
MTAC_Yeast_Alternating_3min		4128	4092	4100	4100	4208		+80	+116	+108	+108		+1.9380%	+2.8348%	+2.6341%	+2.6341%
MTAC_Yeast_Alternating_5min	4215	4248	4218	4214	4218	4350	+135	+102	+132	+136	+132	+3.2028%	+2.4011%	+3.1294%	+3.2273%	+3.1294%
MTAC_Yeast_Standard_3min	4075	4134	4090	4097	4083	4170	+95	+36	+80	+73	+87	+2.3313%	+0.8708%	+1.9560%	+1.7818%	+2.1308%
MTAC_Yeast_Standard_5min	4249	4237	4244	4231	4231	4357	+108	+120	+113	+126	+126	+2.5418%	+2.8322%	+2.6626%	+2.9780%	+2.9780%
Olsen_Astral_3P	13820	14378	14293	14296	14296	14512	+692	+134	+219	+216	+216	+5.0072%	+0.9320%	+1.5322%	+1.5109%	+1.5109%
Olsen_Exploris_3P	7255	7582	7340	7479	7479	7494	+239	-88	+154	+15	+15	+3.2943%	-1.1606%	+2.0981%	+0.2006%	+0.2006%
SCIEX_3P	8652	9109	8679	8618	8618	8718	+66	-391	+39	+100	+100	+0.7628%	-4.2925%	+0.4494%	+1.1604%	+1.1604%
SCP_Astral_1000pg_12ms	3245	3389	3411	3318	3318	3557	+312	+168	+146	+239	+239	+9.6148%	+4.9572%	+4.2803%	+7.2031%	+7.2031%
SCP_Astral_1000pg_24ms	3254	3433	3291	3434	3434	3538	+284	+105	+247	+104	+104	+8.7277%	+3.0585%	+7.5053%	+3.0285%	+3.0285%
SCP_Astral_1000pg_3ms	2450	2396	2450	2397	2397	2462	+12	+66	+12	+65	+65	+0.4898%	+2.7546%	+0.4898%	+2.7117%	+2.7117%
SCP_Astral_1000pg_6ms	2508	2436	2634	2642	2642	2633	+125	+197	-1	-9	-9	+4.9841%	+8.0870%	-0.0380%	-0.3407%	-0.3407%
SCP_Astral_10ng_12ms	5579	5656	5504	5546	5546	5669	+90	+13	+165	+123	+123	+1.6132%	+0.2298%	+2.9978%	+2.2178%	+2.2178%
SCP_Astral_10ng_24ms	4721	4838	4783	4811	4811	4889	+168	+51	+106	+78	+78	+3.5586%	+1.0542%	+2.2162%	+1.6213%	+1.6213%
SCP_Astral_10ng_6ms	5846	5949	5843	5805	5802	5971	+125	+22	+128	+166	+169	+2.1382%	+0.3698%	+2.1907%	+2.8596%	+2.9128%
SCP_Astral_10ng_ms	5611	5655	5596	5553	5572	5693	+82	+38	+97	+140	+121	+1.4614%	+0.6720%	+1.7334%	+2.5212%	+2.1716%
SCP_Astral_250pg_12ms	1292	1424	1406	1288	1288	1352	+60	-72	-54	+64	+64	+4.6440%	-5.0562%	-3.8407%	+4.9689%	+4.9689%
SCP_Astral_250pg_24ms	1568	1660	1758	1873	1873	1923	+355	+263	+165	+50	+50	+22.6403%	+15.8434%	+9.3857%	+2.6695%	+2.6695%
SCP_Astral_250pg_3ms	307	8	350	283	283	283	-24	+275	-67	+0	+0	-7.8176%	+3437.5000%	-19.1429%	+0%	+0%
SCP_Astral_250pg_6ms	637	756	751	766	766	766	+129	+10	+15	+0	+0	+20.2512%	+1.3228%	+1.9973%	+0%	+0%
SCP_Astral_500pg_12ms	2207	2275	2169	2230	2230	2246	+39	-29	+77	+16	+16	+1.7671%	-1.2747%	+3.5500%	+0.7175%	+0.7175%
SCP_Astral_500pg_24ms	2403	2388	2477	2539	2539	2603	+200	+215	+126	+64	+64	+8.3229%	+9.0034%	+5.0868%	+2.5207%	+2.5207%
SCP_Astral_500pg_3ms	525		902	828	828	725	+200		-177	-103	-103	+38.0952%		-19.6231%	-12.4396%	-12.4396%
SCP_Astral_500pg_6ms	1318	1447	1486	1435	1435	1393	+75	-54	-93	-42	-42	+5.6904%	-3.7319%	-6.2584%	-2.9268%	-2.9268%
SCP_Astral_MBR	4708	4720	4712	4715	4719	4759	+51	+39	+47	+44	+40	+1.0833%	+0.8263%	+0.9975%	+0.9332%	+0.8476%
Seer_Astral_45	5802	6297	6122	6133	6137	6193	+391	-104	+71	+60	+56	+6.7391%	-1.6516%	+1.1598%	+0.9783%	+0.9125%
Seer_Astral_single		4685	4700	4632	4632	4712		+27	+12	+80	+80		+0.5763%	+0.2553%	+1.7271%	+1.7271%
YEAST_KO_Astral	4565	4795	4676	4673	4691	4784	+219	-11	+108	+111	+93	+4.7974%	-0.2294%	+2.3097%	+2.3753%	+1.9825%
EWZ_2P_MBR_Exploris	6831	7059	6953		7009
EWZ_2P_MBR_Exploris				7041		7104				+63					+0.8948%
EWZ_2P_MBR_Exploris_Human				6167		6205				+38					+0.6162%
EWZ_2P_MBR_Exploris_YeastHuman				6887		6914				+27					+0.3920%
EWZ_2P_noMBR_Exploris	6858	7077	7019		7009
MacCoss_Eclipse_Normalization_noNorm				5804		5881				+77					+1.3267%
MacCoss_Eclipse_Normalization_yesNorm				5804		5881				+77					+1.3267%

Metric: entrapment.summaries.global_precursors.difference

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
APMS_Astral_Entrapment				-0.0011	-0.0009	-0.0011				-0.0000	-0.0002
EWZ_2P_MBR_Exploris_Entrapment	-0.0006	-0.0004	-0.0002	-0.0011	-0.0011	-0.0011	-0.0006	-0.0007	-0.0009	+0	+0
KEAP1KO_Eclipse_Entrapment				-0.0007	-0.0007	-0.0007				+0	+0
MTAC_3P_Alternating_Entrapment	-0.0005	-0.0001	-0.0010	-0.0008	-0.0008	-0.0008	-0.0003	-0.0007	+0.0002	+0	+0
MTAC_3P_Standard_Entrapment	-0.0014	0.0004	-0.0006	-0.0007	-0.0007	-0.0006	+0.0007	-0.0011	-0.0000	+0.0001	+0.0001
MTAC_Yeast_Alternating_3min_Entrapment		-0.0015	-0.0019	-0.0026	-0.0026	-0.0026		-0.0011	-0.0007	+0	+0
MTAC_Yeast_Alternating_5min_Entrapment	-0.0004	-0.0013	-0.0014	-0.0015	-0.0015	-0.0015	-0.0011	-0.0002	-0.0001	+0	+0
MTAC_Yeast_Standard_3min_Entrapment	-0.0019	-0.0014	-0.0012	-0.0020	-0.0020	-0.0020	-0.0001	-0.0007	-0.0008	+0	+0
MTAC_Yeast_Standard_5min_Entrapment	-0.0010	-0.0020	-0.0024		-0.0025	-0.0025	-0.0015	-0.0006	-0.0001		+0
MacCoss_Eclipse_Normalization_Entrapment				0.0006		0.0006				+0
Olsen_Astral_3P_Entrapment	-0.0015	-0.0008	-0.0013	-0.0015	-0.0015	-0.0015	+0.0000	-0.0007	-0.0002	+0	+0
Olsen_Exploris_3P_Entrapment	-0.0002	0.0003	-0.0011	0.0005	0.0005	0.0005	+0.0006	+0.0002	+0.0016	+0	+0
SCIEX_3P_Entrapment	-0.0005	-0.0001	-0.0004	-0.0006	-0.0006
SCP_Astral_1000pg_12ms_Entrapment	-0.0023		-0.0030		-0.0020	-0.0020	+0.0003		+0.0010		+0
SCP_Astral_1000pg_24ms_Entrapment	-0.0054	-0.0033	-0.0032	-0.0046	-0.0046	-0.0046	+0.0008	-0.0013	-0.0015	+0	+0
SCP_Astral_1000pg_3ms_Entrapment	-0.0030	-0.0048	-0.0030	-0.0038	-0.0046	-0.0046	-0.0016	+0.0002	-0.0016	-0.0008	+0
SCP_Astral_1000pg_6ms_Entrapment	-0.0002	-0.0011	-0.0036	-0.0026	-0.0026	-0.0026	-0.0024	-0.0015	+0.0010	+0	+0
SCP_Astral_10ng_12ms_Entrapment	-0.0022	-0.0017		-0.0024	-0.0024	-0.0024	-0.0002	-0.0007		+0	+0
SCP_Astral_10ng_24ms_Entrapment	-0.0020	0.0009	-0.0015	-0.0013	-0.0013	-0.0013	+0.0007	-0.0022	+0.0002	+0	+0
SCP_Astral_10ng_3ms_Entrapment	-0.0024	-0.0027	-0.0018	-0.0018	-0.0018	-0.0018	+0.0007	+0.0009	+0.0001	+0	+0
SCP_Astral_10ng_6ms_Entrapment	-0.0008	0.0001	-0.0021	-0.0012	-0.0012	-0.0012	-0.0004	-0.0013	+0.0010	+0	+0
SCP_Astral_250pg_12ms_Entrapment	-0.0039	-0.0040	0.0003	-0.0052	-0.0052	-0.0052	-0.0013	-0.0012	-0.0055	+0	+0
SCP_Astral_250pg_24ms_Entrapment	-0.0002	-0.0012	-0.0024	-0.0031	-0.0031	-0.0031	-0.0029	-0.0019	-0.0007	+0	+0
SCP_Astral_250pg_3ms_Entrapment			-0.0069	0	0	0			+0.0069	+0	+0
SCP_Astral_250pg_6ms_Entrapment	-0.0051		-0.0026	-0.0050	-0.0050	-0.0050	+0.0001		-0.0023	+0	+0
SCP_Astral_500pg_12ms_Entrapment	-0.0022	-0.0010	-0.0027	-0.0026	-0.0026	-0.0026	-0.0004	-0.0016	+0.0002	+0	+0
SCP_Astral_500pg_24ms_Entrapment	-0.0013	-0.0024	-0.0012	-0.0011	-0.0011	-0.0011	+0.0002	+0.0013	+0.0001	+0	+0
SCP_Astral_500pg_3ms_Entrapment		-0.0013	-0.0023	-0.0035	-0.0035	-0.0035		-0.0022	-0.0012	+0	+0
SCP_Astral_500pg_6ms_Entrapment		-0.0031	-0.0033	-0.0015	-0.0015	-0.0015		+0.0016	+0.0018	+0	+0
SCP_Astral_MBR_Entrapment	-0.0026	-0.0020	-0.0014	-0.0022	-0.0022	-0.0022	+0.0004	-0.0003	-0.0008	+0	+0
Seer_Astral_45_Entrapment				-0.0023	-0.0023	-0.0023				+0	+0
Seer_Astral_single_Entrapment				-0.0022	-0.0022	-0.0022				+0	+0
YEAST_KO_Astral_Entrapment	-0.0024	-0.0019	-0.0026	-0.0025	-0.0025	-0.0025	-0.0001	-0.0006	+0.0001	+0	+0

Metric: entrapment.summaries.global_proteins.difference

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
APMS_Astral_Entrapment				-0.0024	-0.0021	-0.0024				-0.0000	-0.0004
EWZ_2P_MBR_Exploris_Entrapment	-0.0010	-0.0011	-0.0008	-0.0026	-0.0026	-0.0005	+0.0005	+0.0006	+0.0003	+0.0021	+0.0021
KEAP1KO_Eclipse_Entrapment				-0.0029	-0.0029	-0.0018				+0.0011	+0.0011
MTAC_3P_Alternating_Entrapment	-0.0010	-0.0011	0.0005	0.0007	0.0007	-0.0021	-0.0011	-0.0011	-0.0027	-0.0029	-0.0029
MTAC_3P_Standard_Entrapment	-0.0013	-0.0025	-0.0029	-0.0026	-0.0035	-0.0051	-0.0038	-0.0026	-0.0022	-0.0025	-0.0016
MTAC_Yeast_Alternating_3min_Entrapment		-0.0066	-0.0053	-0.0048	-0.0048	-0.0034		+0.0032	+0.0019	+0.0014	+0.0014
MTAC_Yeast_Alternating_5min_Entrapment	-0.0041	-0.0038	-0.0048	-0.0034	-0.0034	-0.0069	-0.0028	-0.0031	-0.0021	-0.0036	-0.0036
MTAC_Yeast_Standard_3min_Entrapment	-0.0058	-0.0047	-0.0020	-0.0028	-0.0028	-0.0029	+0.0029	+0.0018	-0.0010	-0.0002	-0.0002
MTAC_Yeast_Standard_5min_Entrapment	-0.0036	-0.0045	-0.0056		-0.0041	-0.0052	-0.0016	-0.0007	+0.0004		-0.0011
MacCoss_Eclipse_Normalization_Entrapment				-0.0003		0.0001				+0.0004
Olsen_Astral_3P_Entrapment	-0.0041	-0.0035	-0.0023	-0.0038	-0.0038	-0.0032	+0.0009	+0.0003	-0.0009	+0.0006	+0.0006
Olsen_Exploris_3P_Entrapment	-0.0029	-0.0002	-0.0028	-0.0009	-0.0009	-0.0016	+0.0013	-0.0014	+0.0013	-0.0007	-0.0007
SCIEX_3P_Entrapment	-0.0031	-0.0038	-0.0025	-0.0034	-0.0034
SCP_Astral_1000pg_12ms_Entrapment	-0.0049	-0.0042	-0.0042		-0.0051	-0.0041	+0.0008	+0.0001	+0.0002		+0.0011
SCP_Astral_1000pg_24ms_Entrapment	-0.0070	-0.0058	-0.0070	-0.0070	-0.0070	-0.0082	-0.0012	-0.0024	-0.0012	-0.0012	-0.0012
SCP_Astral_1000pg_3ms_Entrapment	-0.0059	-0.0059	-0.0072	-0.0072	-0.0084	-0.0086	-0.0027	-0.0027	-0.0014	-0.0014	-0.0002
SCP_Astral_1000pg_6ms_Entrapment	-0.0018	-0.0049	-0.0043	-0.0045	-0.0045	-0.0033	-0.0015	+0.0017	+0.0010	+0.0012	+0.0012
SCP_Astral_10ng_12ms_Entrapment	-0.0054	-0.0040		-0.0054	-0.0054	-0.0051	+0.0004	-0.0011		+0.0003	+0.0003
SCP_Astral_10ng_24ms_Entrapment	-0.0032	-0.0023	-0.0016	-0.0045	-0.0045	-0.0049	-0.0016	-0.0026	-0.0032	-0.0004	-0.0004
SCP_Astral_10ng_3ms_Entrapment	-0.0037	-0.0073	-0.0066	-0.0061	-0.0061	-0.0052	-0.0016	+0.0021	+0.0014	+0.0008	+0.0008
SCP_Astral_10ng_6ms_Entrapment	-0.0054	-0.0020	-0.0054	-0.0046	-0.0046	-0.0038	+0.0017	-0.0018	+0.0016	+0.0009	+0.0009
SCP_Astral_250pg_12ms_Entrapment	-0.0053	-0.0076	-0.0034	-0.0064	-0.0064	-0.0063	-0.0010	+0.0014	-0.0028	+0.0001	+0.0001
SCP_Astral_250pg_24ms_Entrapment	-0.0042	-0.0042	-0.0026	-0.0013	-0.0013	-0.0047	-0.0005	-0.0005	-0.0021	-0.0034	-0.0034
SCP_Astral_250pg_3ms_Entrapment	-0.0028	0	-0.0085	0	0	0	+0.0028	+0	+0.0085	+0	+0
SCP_Astral_250pg_6ms_Entrapment	-0.0099	-0.0067	-0.0084	-0.0088	-0.0088	-0.0088	+0.0011	-0.0021	-0.0004	+0	+0
SCP_Astral_500pg_12ms_Entrapment	-0.0036	-0.0040	0.0014	-0.0020	-0.0020	-0.0014	+0.0021	+0.0025	-0.0029	+0.0006	+0.0006
SCP_Astral_500pg_24ms_Entrapment	-0.0020	-0.0001	-0.0051	-0.0062	-0.0062	-0.0052	-0.0031	-0.0050	-0.0000	+0.0010	+0.0010
SCP_Astral_500pg_3ms_Entrapment	-0.0042	0.0071	0.0020	-0.0001	-0.0001	-0.0001	+0.0041	-0.0072	-0.0021	+0	+0
SCP_Astral_500pg_6ms_Entrapment	-0.0045	-0.0045	-0.0008	-0.0056	-0.0056	-0.0055	-0.0010	-0.0010	-0.0048	+0.0000	+0.0000
SCP_Astral_MBR_Entrapment	-0.0059	-0.0030	-0.0025	-0.0050	-0.0050	-0.0036	+0.0023	-0.0006	-0.0011	+0.0014	+0.0014
Seer_Astral_45_Entrapment				-0.0049	-0.0049	-0.0047				+0.0001	+0.0001
Seer_Astral_single_Entrapment				-0.0074	-0.0074	-0.0058				+0.0017	+0.0017
YEAST_KO_Astral_Entrapment	-0.0065	-0.0055	-0.0034	-0.0047	-0.0047	-0.0055	+0.0010	-0.0000	-0.0020	-0.0008	-0.0008

Metric: entrapment.summaries.precursors.difference

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
APMS_Astral_Entrapment				-0.0002	-0.0002	-0.0002				+0.0000	-0.0000
EWZ_2P_MBR_Exploris_Entrapment	-0.0005	-0.0004	-0.0005	-0.0013	-0.0013	-0.0013	-0.0007	-0.0008	-0.0008	+0	+0
KEAP1KO_Eclipse_Entrapment				-0.0003	-0.0003	-0.0003				+0	+0
MTAC_3P_Alternating_Entrapment	-0.0001	0.0003	-0.0002	-0.0001	-0.0001	-0.0001	+0.0000	-0.0004	+0.0001	+0	+0
MTAC_3P_Standard_Entrapment	-0.0009	0.0002	-0.0004	-0.0003	-0.0003	-0.0004	+0.0005	-0.0006	-0.0000	-0.0001	-0.0001
MTAC_Yeast_Alternating_3min_Entrapment		-0.0010	-0.0013	-0.0014	-0.0014	-0.0014		-0.0004	-0.0001	+0	+0
MTAC_Yeast_Alternating_5min_Entrapment	-0.0004	-0.0008	-0.0010	-0.0008	-0.0008	-0.0008	-0.0004	-0.0001	+0.0001	+0	+0
MTAC_Yeast_Standard_3min_Entrapment	-0.0008	-0.0007	-0.0008	-0.0011	-0.0011	-0.0011	-0.0002	-0.0003	-0.0003	+0	+0
MTAC_Yeast_Standard_5min_Entrapment	-0.0008	-0.0010	-0.0015		-0.0015	-0.0015	-0.0007	-0.0005	-0.0000		+0
MacCoss_Eclipse_Normalization_Entrapment				0.0002		0.0002				+0
Olsen_Astral_3P_Entrapment	-0.0008	-0.0003	-0.0008	-0.0008	-0.0008	-0.0008	+0.0000	-0.0005	-0.0000	+0	+0
Olsen_Exploris_3P_Entrapment	-0.0004	0.0005	-0.0006	-0.0000	-0.0000	-0.0000	+0.0004	-0.0005	+0.0006	+0	+0
SCIEX_3P_Entrapment	-0.0005	-0.0002	-0.0002	-0.0004	-0.0004
SCP_Astral_1000pg_12ms_Entrapment	-0.0015		-0.0030		-0.0019	-0.0019	-0.0004		+0.0011		+0
SCP_Astral_1000pg_24ms_Entrapment	-0.0046	-0.0028	-0.0031	-0.0037	-0.0037	-0.0037	+0.0009	-0.0009	-0.0006	+0	+0
SCP_Astral_1000pg_3ms_Entrapment	-0.0020	-0.0029	-0.0026	-0.0026	-0.0034	-0.0034	-0.0014	-0.0005	-0.0008	-0.0008	+0
SCP_Astral_1000pg_6ms_Entrapment	0.0002	-0.0006	-0.0028	-0.0024	-0.0024	-0.0024	-0.0026	-0.0018	+0.0004	+0	+0
SCP_Astral_10ng_12ms_Entrapment	-0.0017	-0.0010		-0.0016	-0.0016	-0.0016	+0.0001	-0.0006		+0	+0
SCP_Astral_10ng_24ms_Entrapment	-0.0014	0.0004	-0.0012	-0.0008	-0.0008	-0.0008	+0.0006	-0.0012	+0.0004	+0	+0
SCP_Astral_10ng_3ms_Entrapment	-0.0019	-0.0020	-0.0016	-0.0015	-0.0015	-0.0015	+0.0005	+0.0006	+0.0001	+0	+0
SCP_Astral_10ng_6ms_Entrapment	-0.0005	0.0002	-0.0012	-0.0008	-0.0008	-0.0008	-0.0003	-0.0011	+0.0004	+0	+0
SCP_Astral_250pg_12ms_Entrapment	-0.0030	-0.0027	-0.0003	-0.0031	-0.0031	-0.0031	-0.0001	-0.0005	-0.0029	+0	+0
SCP_Astral_250pg_24ms_Entrapment	-0.0007	-0.0008	-0.0013	-0.0014	-0.0014	-0.0014	-0.0007	-0.0006	-0.0001	+0	+0
SCP_Astral_250pg_3ms_Entrapment			-0.0060	0	0	0			+0.0060	+0	+0
SCP_Astral_250pg_6ms_Entrapment	-0.0037		-0.0021	-0.0030	-0.0030	-0.0030	+0.0007		-0.0009	+0	+0
SCP_Astral_500pg_12ms_Entrapment	-0.0019	-0.0004	-0.0020	-0.0013	-0.0013	-0.0013	+0.0005	-0.0010	+0.0007	+0	+0
SCP_Astral_500pg_24ms_Entrapment	-0.0016	-0.0017	-0.0018	-0.0017	-0.0017	-0.0017	-0.0001	+0.0001	+0.0001	+0	+0
SCP_Astral_500pg_3ms_Entrapment		0.0019	-0.0004	-0.0016	-0.0016	-0.0016		-0.0034	-0.0012	+0	+0
SCP_Astral_500pg_6ms_Entrapment		-0.0025	-0.0019	-0.0010	-0.0010	-0.0010		+0.0015	+0.0009	+0	+0
SCP_Astral_MBR_Entrapment	-0.0017	-0.0015	-0.0008	-0.0013	-0.0013	-0.0013	+0.0005	+0.0002	-0.0005	+0	+0
Seer_Astral_45_Entrapment				-0.0011	-0.0011	-0.0011				+0	+0
Seer_Astral_single_Entrapment				-0.0022	-0.0022	-0.0022				+0	+0
YEAST_KO_Astral_Entrapment	-0.0013	-0.0006	-0.0007	-0.0007	-0.0007	-0.0007	+0.0006	-0.0001	+0.0001	+0	+0

Metric: entrapment.summaries.proteins.difference

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
APMS_Astral_Entrapment				-0.0008	-0.0012	-0.0013				-0.0005	-0.0001
EWZ_2P_MBR_Exploris_Entrapment	-0.0002	-0.0007	-0.0001	-0.0012	-0.0012	-0.0005	-0.0003	+0.0002	-0.0004	+0.0007	+0.0007
KEAP1KO_Eclipse_Entrapment				-0.0016	-0.0016	-0.0005				+0.0011	+0.0011
MTAC_3P_Alternating_Entrapment	-0.0001	-0.0002	0.0003	0.0002	0.0002	-0.0010	-0.0009	-0.0008	-0.0013	-0.0013	-0.0013
MTAC_3P_Standard_Entrapment	-0.0008	-0.0014	-0.0021	-0.0018	-0.0021	-0.0027	-0.0018	-0.0013	-0.0006	-0.0008	-0.0006
MTAC_Yeast_Alternating_3min_Entrapment		-0.0036	-0.0034	-0.0030	-0.0030	-0.0022		+0.0014	+0.0012	+0.0008	+0.0008
MTAC_Yeast_Alternating_5min_Entrapment	-0.0037	-0.0021	-0.0025	-0.0013	-0.0013	-0.0029	+0.0008	-0.0008	-0.0005	-0.0016	-0.0016
MTAC_Yeast_Standard_3min_Entrapment	-0.0038	-0.0035	-0.0014	-0.0016	-0.0016	-0.0021	+0.0017	+0.0014	-0.0007	-0.0005	-0.0005
MTAC_Yeast_Standard_5min_Entrapment	-0.0023	-0.0027	-0.0037		-0.0021	-0.0031	-0.0008	-0.0004	+0.0007		-0.0010
MacCoss_Eclipse_Normalization_Entrapment				-0.0005		-0.0008				-0.0003
Olsen_Astral_3P_Entrapment	-0.0024	-0.0021	-0.0019	-0.0024	-0.0024	-0.0012	+0.0012	+0.0009	+0.0007	+0.0012	+0.0012
Olsen_Exploris_3P_Entrapment	-0.0026	0.0006	-0.0017	-0.0016	-0.0016	-0.0020	+0.0006	-0.0026	-0.0003	-0.0004	-0.0004
SCIEX_3P_Entrapment	-0.0036	-0.0032	-0.0021	-0.0028	-0.0028
SCP_Astral_1000pg_12ms_Entrapment	-0.0037	-0.0023	-0.0032		-0.0032	-0.0033	+0.0004	-0.0010	-0.0001		-0.0001
SCP_Astral_1000pg_24ms_Entrapment	-0.0049	-0.0056	-0.0058	-0.0043	-0.0043	-0.0052	-0.0003	+0.0004	+0.0006	-0.0008	-0.0008
SCP_Astral_1000pg_3ms_Entrapment	-0.0044	-0.0033	-0.0041	-0.0031	-0.0039	-0.0057	-0.0014	-0.0024	-0.0017	-0.0026	-0.0019
SCP_Astral_1000pg_6ms_Entrapment	-0.0025	-0.0035	-0.0040	-0.0040	-0.0040	-0.0030	-0.0006	+0.0005	+0.0010	+0.0010	+0.0010
SCP_Astral_10ng_12ms_Entrapment	-0.0047	-0.0031		-0.0042	-0.0042	-0.0042	+0.0005	-0.0011		-0.0000	-0.0000
SCP_Astral_10ng_24ms_Entrapment	-0.0032	-0.0014	-0.0014	-0.0025	-0.0025	-0.0028	+0.0004	-0.0015	-0.0014	-0.0003	-0.0003
SCP_Astral_10ng_3ms_Entrapment	-0.0021	-0.0046	-0.0038	-0.0033	-0.0033	-0.0037	-0.0015	+0.0009	+0.0001	-0.0004	-0.0004
SCP_Astral_10ng_6ms_Entrapment	-0.0039	-0.0019	-0.0038	-0.0029	-0.0029	-0.0033	+0.0005	-0.0015	+0.0005	-0.0004	-0.0004
SCP_Astral_250pg_12ms_Entrapment	-0.0039	-0.0041	-0.0019	-0.0030	-0.0030	-0.0043	-0.0005	-0.0002	-0.0024	-0.0013	-0.0013
SCP_Astral_250pg_24ms_Entrapment	-0.0013	-0.0032	-0.0003	-0.0001	-0.0001	-0.0028	-0.0015	+0.0004	-0.0025	-0.0027	-0.0027
SCP_Astral_250pg_3ms_Entrapment	-0.0060	-0.0082	-0.0047	0	0	0	+0.0060	+0.0082	+0.0047	+0	+0
SCP_Astral_250pg_6ms_Entrapment	-0.0100	-0.0068	-0.0055	-0.0047	-0.0047	-0.0047	+0.0052	+0.0021	+0.0008	+0	+0
SCP_Astral_500pg_12ms_Entrapment	-0.0040	-0.0035	-0.0007	-0.0028	-0.0028	-0.0015	+0.0024	+0.0020	-0.0008	+0.0012	+0.0012
SCP_Astral_500pg_24ms_Entrapment	-0.0019	0.0001	-0.0043	-0.0045	-0.0045	-0.0056	-0.0037	-0.0057	-0.0013	-0.0012	-0.0012
SCP_Astral_500pg_3ms_Entrapment	-0.0032	0.0066	0.0028	0.0003	0.0003	0.0003	+0.0035	-0.0063	-0.0025	+0	+0
SCP_Astral_500pg_6ms_Entrapment	-0.0020	-0.0022	0.0009	-0.0028	-0.0028	-0.0030	-0.0011	-0.0008	-0.0039	-0.0002	-0.0002
SCP_Astral_MBR_Entrapment	-0.0024	-0.0017	-0.0022	-0.0028	-0.0028	-0.0022	+0.0002	-0.0004	+0.0000	+0.0007	+0.0007
Seer_Astral_45_Entrapment				-0.0029	-0.0029	-0.0016				+0.0013	+0.0013
Seer_Astral_single_Entrapment				-0.0074	-0.0074	-0.0058				+0.0017	+0.0017
YEAST_KO_Astral_Entrapment	-0.0041	-0.0030	-0.0016	-0.0021	-0.0021	-0.0019	+0.0023	+0.0011	-0.0002	+0.0003	+0.0003

Metric: ftr.precursors.additional_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris				24395		24588				+193

Metric: ftr.precursors.additional_yeast_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris				771		762				-9

Metric: ftr.precursors.false_transfer_rate

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris	0.0131	0.0047	0.0115	0.0316	0	0.0310	+0.0179	+0.0262	+0.0195	-0.0006	+0.0310

Metric: ftr.protein_groups.additional_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris				844		433				-411

Metric: ftr.protein_groups.additional_yeast_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris				190		210				+20

Metric: ftr.protein_groups.false_transfer_rate

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris	0.0476	0.1485	0	0.2251	0	0.4850	+0.4374	+0.3365	+0.4850	+0.2599	+0.4850

keap1.precursors

Filter:

Dataset	Gene	Run	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4	Δ current vs develop
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_1	0	1	1	1	1	1	+1	+0	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_2	0	1	1	1	1	1	+1	+0	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_3	0	1	3	3	3	3	+1	+2	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_1	9	13	14	15	15	15	+4	+1	+1	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_2	9	13	13	14	14	14	+4	+0	+1	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_3	10	13	13	14	14	14	+3	+0	+1	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_1	1	1	2	2	2	2	+0	+1	+0	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_2	1	1	2	2	2	2	+0	+1	+0	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_3	1	1	2	2	2	2	+0	+1	+0	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_1	0	0	1	1	1	1	+0	+1	+0	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_2	0	0	1	1	1	1	+0	+1	+0	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_3	0	0	0	0	0	0	+0	+0	+0	+0	+0

keap1.protein_groups

Filter:

Dataset	Gene	Run	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4	Δ current vs develop
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_1	0	0	0	0	0	0	+0	+0	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_2	0	0	0	0	0	0	+0	+0	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_3	0	0	1	1	1	1	+0	+1	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_1	1	1	1	1	1	1	+0	+0	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_2	1	1	1	1	1	1	+0	+0	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_3	1	1	1	1	1	1	+0	+0	+0	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_1	0	0	1	0	0	1	+0	+1	-1	+0	+1
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_2	0	0	1	1	1	1	+0	+1	+0	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_3	0	0	1	1	1	1	+0	+1	+0	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_1	0	0	0	0	0	1	+0	+0	+0	+0	+1
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_2	0	0	0	0	0	1	+0	+0	+0	+0	+1
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_3	0	0	0	0	0	0	+0	+0	+0	+0	+0

Metric: cv.precursors.median_cv

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
MTAC_3P_Alternating	0.1459	0.1421	0.1400	0.1374	0.1374	0.1374	-0.0085	-0.0047	-0.0027	+0	+0
MTAC_3P_Standard	0.1393	0.1362	0.1351	0.1324	0.1324	0.1324	-0.0069	-0.0039	-0.0028	+0	+0
MTAC_Yeast_Alternating_3min		0.1456	0.1424	0.1408	0.1408	0.1408		-0.0048	-0.0017	+0	+0
MTAC_Yeast_Alternating_5min	0.1531	0.1409	0.1376	0.1356	0.1355	0.1353	-0.0178	-0.0057	-0.0023	-0.0003	-0.0003
MTAC_Yeast_Standard_3min	0.1698	0.1639	0.1616	0.1599	0.1597	0.1597	-0.0101	-0.0043	-0.0019	-0.0003	+0
MTAC_Yeast_Standard_5min	0.1503	0.1366	0.1337	0.1323	0.1323	0.1323	-0.0180	-0.0043	-0.0014	+0	+0
Olsen_Astral_3P	0.0823	0.0884	0.0854	0.0832	0.0832	0.0832	+0.0009	-0.0052	-0.0022	+0	+0
Olsen_Exploris_3P	0.1480	0.1499	0.1495	0.1505	0.1505	0.1505	+0.0025	+0.0006	+0.0010	+0	+0
SCIEX_3P	0.1284	0.1282	0.1196	0.1184	0.1184	0.1184	-0.0100	-0.0098	-0.0012	+0	+0
MacCoss_Eclipse_Normalization_noNorm				0.5869		0.5869				+0
MacCoss_Eclipse_Normalization_yesNorm				0.1717		0.1717				+0

Metric: cv.protein_groups.median_cv

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
MTAC_3P_Alternating	0.0763	0.0739	0.0727	0.0720	0.0720	0.0755	-0.0008	+0.0016	+0.0028	+0.0035	+0.0035
MTAC_3P_Standard	0.0723	0.0703	0.0700	0.0688	0.0688	0.0718	-0.0005	+0.0015	+0.0019	+0.0030	+0.0030
MTAC_Yeast_Alternating_3min		0.0673	0.0660	0.0658	0.0658	0.0685		+0.0012	+0.0025	+0.0027	+0.0027
MTAC_Yeast_Alternating_5min	0.0778	0.0603	0.0593	0.0588	0.0588	0.0609	-0.0169	+0.0006	+0.0016	+0.0021	+0.0021
MTAC_Yeast_Standard_3min	0.0792	0.0756	0.0753	0.0772	0.0762	0.0769	-0.0023	+0.0013	+0.0016	-0.0003	+0.0007
MTAC_Yeast_Standard_5min	0.0770	0.0567	0.0569	0.0568	0.0568	0.0587	-0.0184	+0.0019	+0.0018	+0.0018	+0.0018
Olsen_Astral_3P	0.0374	0.0373	0.0367	0.0363	0.0363	0.0373	-0.0001	-0.0001	+0.0005	+0.0010	+0.0010
Olsen_Exploris_3P	0.1028	0.1019	0.1036	0.1027	0.1027	0.1033	+0.0005	+0.0014	-0.0003	+0.0006	+0.0006
SCIEX_3P	0.0864	0.0832	0.0787	0.0785	0.0785	0.0797	-0.0067	-0.0035	+0.0011	+0.0012	+0.0012
MacCoss_Eclipse_Normalization_noNorm				0.5881		0.5884				+0.0003
MacCoss_Eclipse_Normalization_yesNorm				0.1233		0.1245				+0.0012

fold_change.error.precursors

Filter:

Dataset	Species	Condition	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4	Δ current vs develop
MTAC_3P_Alternating	ecoli	A vs B	-0.0714	-0.0694	-0.0765	-0.0777	-0.0777	-0.0777	-0.0020	+0.0070	+0.0012	+0	+0
MTAC_3P_Alternating	human	A vs B	-0.0432	-0.0356	-0.0411	-0.0409	-0.0409	-0.0409	-0.0076	+0.0055	-0.0002	+0	+0
MTAC_3P_Alternating	yeast	A vs B	-0.0026	0.0033	-0.0010	0.0009	0.0009	0.0009	+0.0007	-0.0023	-0.0001	+0	+0
MTAC_3P_Standard	ecoli	A vs B	-0.1245	-0.1257	-0.1249	-0.1269	-0.1269	-0.1269	+0.0012	-0.0008	+0.0020	+0	+0
MTAC_3P_Standard	human	A vs B	-0.0785	-0.0731	-0.0725	-0.0722	-0.0722	-0.0722	-0.0054	-0.0006	-0.0003	+0	+0
MTAC_3P_Standard	yeast	A vs B	-0.0337	-0.0257	-0.0306	-0.0291	-0.0291	-0.0291	-0.0080	+0.0050	-0.0016	+0	+0
Olsen_Astral_3P	ecoli	B vs A	-0.0570	-0.0684	-0.1013	-0.0961	-0.0961	-0.0961	+0.0114	+0.0329	-0.0052	+0	+0
Olsen_Astral_3P	ecoli	D vs C	-0.2013	-0.2128	-0.2280	-0.2291	-0.2291	-0.2291	+0.0115	+0.0151	+0.0011	+0	+0
Olsen_Astral_3P	ecoli	F vs E	0.0193	-0.0111	-0.0392	-0.0197	-0.0197	-0.0197	-0.0082	+0.0282	-0.0195	+0	+0
Olsen_Astral_3P	human	B vs A	-0.0036	-0.0103	-0.0408	-0.0422	-0.0422	-0.0422	+0.0067	+0.0305	+0.0014	+0	+0
Olsen_Astral_3P	human	D vs C	-0.3258	-0.3338	-0.3431	-0.3429	-0.3429	-0.3429	+0.0081	+0.0093	-0.0002	+0	+0
Olsen_Astral_3P	human	F vs E	0.0777	0.0753	0.0351	0.0335	0.0335	0.0335	-0.0024	-0.0402	-0.0016	+0	+0
Olsen_Astral_3P	yeast	B vs A	0.0756	0.0864	0.0719	0.0731	0.0731	0.0731	+0.0108	-0.0145	+0.0012	+0	+0
Olsen_Astral_3P	yeast	D vs C	-0.2263	-0.2278	-0.2316	-0.2278	-0.2278	-0.2278	+0.0015	+0.0038	-0.0038	+0	+0
Olsen_Astral_3P	yeast	F vs E	0.1940	0.2203	0.2012	0.2023	0.2023	0.2023	+0.0262	-0.0191	+0.0011	+0	+0
Olsen_Exploris_3P	ecoli	B vs A	0.2272	0.2213	0.2154	0.2365	0.2365	0.2365	-0.0059	-0.0059	+0.0211	+0	+0
Olsen_Exploris_3P	ecoli	D vs C	-0.0687	-0.0749	-0.0796	-0.0605	-0.0605	-0.0605	+0.0062	+0.0047	-0.0191	+0	+0
Olsen_Exploris_3P	ecoli	F vs E	0.2556	0.2739	0.2498	0.2785	0.2785	0.2785	+0.0183	-0.0240	+0.0287	+0	+0
Olsen_Exploris_3P	human	B vs A	0.0955	0.1003	0.0949	0.0883	0.0883	0.0883	+0.0048	-0.0054	-0.0067	+0	+0
Olsen_Exploris_3P	human	D vs C	-0.0535	-0.0544	-0.0545	-0.0456	-0.0456	-0.0456	+0.0009	+0.0001	-0.0089	+0	+0
Olsen_Exploris_3P	human	F vs E	0.1998	0.2049	0.2032	0.2036	0.2036	0.2036	+0.0051	-0.0017	+0.0004	+0	+0
Olsen_Exploris_3P	yeast	B vs A	0.0478	0.0446	0.0384	0.0225	0.0225	0.0225	-0.0032	-0.0062	-0.0160	+0	+0
Olsen_Exploris_3P	yeast	D vs C	-0.1076	-0.1118	-0.1074	-0.1020	-0.1020	-0.1020	+0.0043	-0.0045	-0.0054	+0	+0
Olsen_Exploris_3P	yeast	F vs E	-0.0679	-0.0848	-0.0610	-0.0965	-0.0965	-0.0965	+0.0169	-0.0238	+0.0355	+0	+0
SCIEX_3P	ecoli	B vs A	-0.0531	-0.0727	-0.0768	-0.0773	-0.0773	-0.0773	+0.0195	+0.0041	+0.0006	+0	+0
SCIEX_3P	ecoli	C vs A	-0.0580	-0.0550	-0.0675	-0.0681	-0.0681	-0.0681	-0.0031	+0.0125	+0.0006	+0	+0
SCIEX_3P	ecoli	C vs B	-0.0146	0.0095	0.0024	0.0036	0.0036	0.0036	-0.0051	-0.0071	+0.0012	+0	+0
SCIEX_3P	human	B vs A	-0.0334	-0.0453	-0.0427	-0.0425	-0.0425	-0.0425	+0.0119	-0.0026	-0.0002	+0	+0
SCIEX_3P	human	C vs A	-0.0804	-0.0567	-0.0616	-0.0618	-0.0618	-0.0618	-0.0238	+0.0049	+0.0003	+0	+0
SCIEX_3P	human	C vs B	-0.0484	-0.0153	-0.0226	-0.0230	-0.0230	-0.0230	-0.0331	+0.0073	+0.0004	+0	+0
SCIEX_3P	yeast	B vs A	-0.0084	-0.0194	-0.0094	-0.0084	-0.0084	-0.0084	+0.0109	-0.0100	-0.0011	+0	+0
SCIEX_3P	yeast	C vs A	-0.1064	-0.0708	-0.0563	-0.0587	-0.0587	-0.0587	-0.0356	-0.0145	+0.0024	+0	+0
SCIEX_3P	yeast	C vs B	-0.0912	-0.0443	-0.0379	-0.0368	-0.0368	-0.0368	-0.0468	-0.0064	-0.0010	+0	+0

fold_change.error.protein_groups

Filter:

Dataset	Species	Condition	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4	Δ current vs develop
MTAC_3P_Alternating	ecoli	A vs B	-0.0653	-0.0663	-0.0738	-0.0733	-0.0733	-0.0737	+0.0009	+0.0076	-0.0005	+0	+0.0004
MTAC_3P_Alternating	human	A vs B	-0.0451	-0.0362	-0.0407	-0.0411	-0.0411	-0.0421	-0.0089	+0.0045	+0.0004	+0	+0.0010
MTAC_3P_Alternating	yeast	A vs B	0.0016	0.0070	-0.0025	-0.0036	-0.0036	-0.0045	+0.0054	-0.0044	+0.0010	+0	+0.0009
MTAC_3P_Standard	ecoli	A vs B	-0.1244	-0.1257	-0.1262	-0.1206	-0.1206	-0.1231	+0.0013	+0.0005	-0.0055	+0	+0.0025
MTAC_3P_Standard	human	A vs B	-0.0772	-0.0711	-0.0706	-0.0701	-0.0701	-0.0699	-0.0060	-0.0005	-0.0005	+0	-0.0002
MTAC_3P_Standard	yeast	A vs B	-0.0322	-0.0239	-0.0317	-0.0310	-0.0310	-0.0301	-0.0084	+0.0078	-0.0007	+0	-0.0009
Olsen_Astral_3P	ecoli	B vs A	-0.0453	-0.0595	-0.0960	-0.0903	-0.0903	-0.0953	+0.0142	+0.0365	-0.0057	+0	+0.0049
Olsen_Astral_3P	ecoli	D vs C	-0.1614	-0.1664	-0.1707	-0.1634	-0.1634	-0.1613	+0.0050	+0.0043	-0.0072	+0	-0.0021
Olsen_Astral_3P	ecoli	F vs E	0.0601	0.0263	-0.0017	0.0172	0.0172	-0.0063	-0.0338	-0.0246	+0.0154	+0	-0.0109
Olsen_Astral_3P	human	B vs A	-0.0149	-0.0213	-0.0503	-0.0525	-0.0525	-0.0525	+0.0064	+0.0290	+0.0021	+0	+0.0001
Olsen_Astral_3P	human	D vs C	-0.2928	-0.3000	-0.3066	-0.3056	-0.3056	-0.3058	+0.0072	+0.0066	-0.0010	+0	+0.0002
Olsen_Astral_3P	human	F vs E	0.0700	0.0702	0.0300	0.0288	0.0288	0.0283	+0.0002	-0.0402	-0.0012	+0	-0.0004
Olsen_Astral_3P	yeast	B vs A	0.0543	0.0667	0.0532	0.0510	0.0510	0.0507	+0.0124	-0.0135	-0.0021	+0	-0.0003
Olsen_Astral_3P	yeast	D vs C	-0.1994	-0.1991	-0.2000	-0.1957	-0.1957	-0.1971	-0.0003	+0.0009	-0.0042	+0	+0.0014
Olsen_Astral_3P	yeast	F vs E	0.1690	0.1979	0.1791	0.1803	0.1803	0.1820	+0.0289	-0.0188	+0.0012	+0	+0.0018
Olsen_Exploris_3P	ecoli	B vs A	0.2172	0.2094	0.2067	0.2211	0.2211	0.2100	-0.0077	-0.0028	+0.0144	+0	-0.0111
Olsen_Exploris_3P	ecoli	D vs C	-0.0663	-0.0711	-0.0727	-0.0557	-0.0557	-0.0530	+0.0048	+0.0016	-0.0170	+0	-0.0027
Olsen_Exploris_3P	ecoli	F vs E	0.2558	0.3062	0.2582	0.2654	0.2654	0.2684	+0.0504	-0.0481	+0.0073	+0	+0.0030
Olsen_Exploris_3P	human	B vs A	0.0841	0.0872	0.0840	0.0759	0.0759	0.0759	+0.0031	-0.0032	-0.0081	+0	-0.0000
Olsen_Exploris_3P	human	D vs C	-0.0502	-0.0513	-0.0505	-0.0421	-0.0421	-0.0420	+0.0011	-0.0008	-0.0084	+0	-0.0001
Olsen_Exploris_3P	human	F vs E	0.1988	0.2024	0.2017	0.2033	0.2033	0.2033	+0.0036	-0.0008	+0.0016	+0	+0.0001
Olsen_Exploris_3P	yeast	B vs A	0.0433	0.0439	0.0342	0.0046	0.0046	0.0002	+0.0005	-0.0096	-0.0297	+0	-0.0044
Olsen_Exploris_3P	yeast	D vs C	-0.1095	-0.1151	-0.1117	-0.1085	-0.1085	-0.1094	+0.0056	-0.0034	-0.0033	+0	+0.0009
Olsen_Exploris_3P	yeast	F vs E	-0.0534	-0.0939	-0.0850	-0.1172	-0.1172	-0.1189	+0.0405	-0.0089	+0.0322	+0	+0.0017
SCIEX_3P	ecoli	B vs A	-0.0415	-0.0673	-0.0702	-0.0700	-0.0700	-0.0732	+0.0258	+0.0029	-0.0003	+0	+0.0032
SCIEX_3P	ecoli	C vs A	-0.0531	-0.0481	-0.0623	-0.0677	-0.0677	-0.0683	-0.0049	+0.0142	+0.0054	+0	+0.0006
SCIEX_3P	ecoli	C vs B	-0.0149	0.0149	0.0041	0.0041	0.0041	0.0035	-0.0001	-0.0108	+0.0000	+0	-0.0006
SCIEX_3P	human	B vs A	-0.0318	-0.0455	-0.0407	-0.0408	-0.0408	-0.0407	+0.0137	-0.0048	+0.0001	+0	-0.0000
SCIEX_3P	human	C vs A	-0.0819	-0.0587	-0.0614	-0.0626	-0.0626	-0.0629	-0.0232	+0.0027	+0.0012	+0	+0.0004
SCIEX_3P	human	C vs B	-0.0489	-0.0139	-0.0215	-0.0217	-0.0217	-0.0218	-0.0350	+0.0076	+0.0002	+0	+0.0001
SCIEX_3P	yeast	B vs A	-0.0091	-0.0222	-0.0113	-0.0116	-0.0116	-0.0131	+0.0131	-0.0109	+0.0003	+0	+0.0015
SCIEX_3P	yeast	C vs A	-0.1151	-0.0716	-0.0556	-0.0578	-0.0578	-0.0533	-0.0435	-0.0160	+0.0023	+0	-0.0045
SCIEX_3P	yeast	C vs B	-0.1020	-0.0512	-0.0434	-0.0443	-0.0443	-0.0438	-0.0508	-0.0078	+0.0009	+0	-0.0005

fold_change.variance.precursors

Filter:

Dataset	Species	Condition	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4	Δ current vs develop
MTAC_3P_Alternating	ecoli	A vs B	0.2619	0.2962	0.3164	0.3078	0.3078	0.3078	+0.0343	+0.0202	-0.0086	+0	+0
MTAC_3P_Alternating	human	A vs B	0.1984	0.2153	0.2095	0.2099	0.2099	0.2099	+0.0169	-0.0058	+0.0004	+0	+0
MTAC_3P_Alternating	yeast	A vs B	0.2558	0.2675	0.2598	0.2608	0.2608	0.2608	+0.0117	-0.0078	+0.0011	+0	+0
MTAC_3P_Standard	ecoli	A vs B	0.2681	0.3123	0.3116	0.2980	0.2980	0.2980	+0.0441	-0.0007	-0.0136	+0	+0
MTAC_3P_Standard	human	A vs B	0.2062	0.2226	0.2195	0.2193	0.2193	0.2193	+0.0164	-0.0031	-0.0002	+0	+0
MTAC_3P_Standard	yeast	A vs B	0.2555	0.2725	0.2662	0.2680	0.2680	0.2680	+0.0170	-0.0063	+0.0017	+0	+0
Olsen_Astral_3P	ecoli	B vs A	0.5438	0.5792	0.6177	0.5756	0.5756	0.5756	+0.0354	+0.0384	-0.0420	+0	+0
Olsen_Astral_3P	ecoli	D vs C	0.3566	0.3988	0.3667	0.3500	0.3500	0.3500	+0.0422	-0.0321	-0.0167	+0	+0
Olsen_Astral_3P	ecoli	F vs E	1.1682	1.3857	1.3577	1.2411	1.2411	1.2411	+0.2175	-0.0279	-0.1166	+0	+0
Olsen_Astral_3P	human	B vs A	0.2100	0.2526	0.2600	0.2564	0.2564	0.2564	+0.0427	+0.0074	-0.0036	+0	+0
Olsen_Astral_3P	human	D vs C	0.2930	0.3403	0.3434	0.3356	0.3356	0.3356	+0.0473	+0.0030	-0.0078	+0	+0
Olsen_Astral_3P	human	F vs E	0.3046	0.3595	0.3858	0.3801	0.3801	0.3801	+0.0549	+0.0262	-0.0056	+0	+0
Olsen_Astral_3P	yeast	B vs A	0.2937	0.3296	0.3425	0.3315	0.3315	0.3315	+0.0358	+0.0129	-0.0110	+0	+0
Olsen_Astral_3P	yeast	D vs C	0.2553	0.2827	0.2872	0.2854	0.2854	0.2854	+0.0274	+0.0045	-0.0018	+0	+0
Olsen_Astral_3P	yeast	F vs E	0.4774	0.5552	0.5553	0.5384	0.5384	0.5384	+0.0778	+0.0001	-0.0169	+0	+0
Olsen_Exploris_3P	ecoli	B vs A	0.5783	0.6229	0.6989	0.5708	0.5708	0.5708	+0.0445	+0.0761	-0.1281	+0	+0
Olsen_Exploris_3P	ecoli	D vs C	0.1629	0.1526	0.1660	0.1512	0.1512	0.1512	-0.0103	+0.0134	-0.0147	+0	+0
Olsen_Exploris_3P	ecoli	F vs E	0.8044	0.8013	0.9497	0.9575	0.9575	0.9575	-0.0030	+0.1483	+0.0078	+0	+0
Olsen_Exploris_3P	human	B vs A	0.3372	0.3409	0.3454	0.3505	0.3505	0.3505	+0.0037	+0.0045	+0.0051	+0	+0
Olsen_Exploris_3P	human	D vs C	0.1096	0.1772	0.1685	0.1517	0.1517	0.1517	+0.0676	-0.0087	-0.0168	+0	+0
Olsen_Exploris_3P	human	F vs E	0.3024	0.3340	0.3402	0.3353	0.3353	0.3353	+0.0316	+0.0062	-0.0049	+0	+0
Olsen_Exploris_3P	yeast	B vs A	0.6189	0.6096	0.6474	0.5768	0.5768	0.5768	-0.0093	+0.0378	-0.0706	+0	+0
Olsen_Exploris_3P	yeast	D vs C	0.1498	0.2475	0.2320	0.2479	0.2479	0.2479	+0.0977	-0.0155	+0.0159	+0	+0
Olsen_Exploris_3P	yeast	F vs E	1.0859	1.1596	1.3578	1.2751	1.2751	1.2751	+0.0737	+0.1982	-0.0827	+0	+0
SCIEX_3P	ecoli	B vs A	0.5007	0.5328	0.4878	0.4827	0.4827	0.4827	+0.0321	-0.0450	-0.0051	+0	+0
SCIEX_3P	ecoli	C vs A	0.5855	0.6055	0.5762	0.5418	0.5418	0.5418	+0.0200	-0.0293	-0.0344	+0	+0
SCIEX_3P	ecoli	C vs B	0.1466	0.1534	0.1147	0.1067	0.1067	0.1067	+0.0068	-0.0387	-0.0080	+0	+0
SCIEX_3P	human	B vs A	0.1942	0.2132	0.1548	0.1520	0.1520	0.1520	+0.0190	-0.0584	-0.0028	+0	+0
SCIEX_3P	human	C vs A	0.2171	0.2452	0.1974	0.1943	0.1943	0.1943	+0.0281	-0.0478	-0.0031	+0	+0
SCIEX_3P	human	C vs B	0.1705	0.1978	0.1377	0.1340	0.1340	0.1340	+0.0273	-0.0601	-0.0037	+0	+0
SCIEX_3P	yeast	B vs A	0.2341	0.2472	0.1858	0.1850	0.1850	0.1850	+0.0130	-0.0614	-0.0008	+0	+0
SCIEX_3P	yeast	C vs A	0.5719	0.6338	0.5883	0.5740	0.5740	0.5740	+0.0619	-0.0455	-0.0143	+0	+0
SCIEX_3P	yeast	C vs B	0.4881	0.5568	0.5075	0.4971	0.4971	0.4971	+0.0688	-0.0494	-0.0103	+0	+0

fold_change.variance.protein_groups

Filter:

Dataset	Species	Condition	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4	Δ current vs develop
MTAC_3P_Alternating	ecoli	A vs B	0.1295	0.1444	0.1262	0.1208	0.1208	0.2225	+0.0149	-0.0182	-0.0054	+0	+0.1017
MTAC_3P_Alternating	human	A vs B	0.0731	0.0766	0.0771	0.0815	0.0815	0.0900	+0.0035	+0.0005	+0.0043	+0	+0.0086
MTAC_3P_Alternating	yeast	A vs B	0.1300	0.1143	0.1039	0.1122	0.1122	0.1509	-0.0157	-0.0104	+0.0083	+0	+0.0387
MTAC_3P_Standard	ecoli	A vs B	0.1320	0.1278	0.1280	0.1196	0.1196	0.1892	-0.0042	+0.0002	-0.0084	+0	+0.0696
MTAC_3P_Standard	human	A vs B	0.0679	0.0711	0.0681	0.0716	0.0716	0.0903	+0.0032	-0.0030	+0.0035	+0	+0.0187
MTAC_3P_Standard	yeast	A vs B	0.1262	0.1262	0.1335	0.1254	0.1254	0.1685	+0.0000	+0.0073	-0.0081	+0	+0.0431
Olsen_Astral_3P	ecoli	B vs A	0.1924	0.2326	0.2190	0.2657	0.2657	0.4339	+0.0402	-0.0136	+0.0467	+0	+0.1682
Olsen_Astral_3P	ecoli	D vs C	0.1089	0.1405	0.1197	0.1086	0.1086	0.1814	+0.0316	-0.0208	-0.0112	+0	+0.0728
Olsen_Astral_3P	ecoli	F vs E	0.3405	0.4711	0.4575	0.3928	0.3928	1.0019	+0.1306	-0.0136	-0.0647	+0	+0.6091
Olsen_Astral_3P	human	B vs A	0.0420	0.0451	0.0485	0.0465	0.0465	0.0588	+0.0032	+0.0034	-0.0021	+0	+0.0123
Olsen_Astral_3P	human	D vs C	0.0549	0.0659	0.0612	0.0625	0.0625	0.0697	+0.0110	-0.0047	+0.0013	+0	+0.0072
Olsen_Astral_3P	human	F vs E	0.0528	0.0583	0.0583	0.0620	0.0620	0.0713	+0.0055	-0.0000	+0.0038	+0	+0.0093
Olsen_Astral_3P	yeast	B vs A	0.0563	0.0589	0.0668	0.0632	0.0632	0.0724	+0.0026	+0.0079	-0.0036	+0	+0.0093
Olsen_Astral_3P	yeast	D vs C	0.0483	0.0497	0.0503	0.0513	0.0513	0.0521	+0.0015	+0.0006	+0.0010	+0	+0.0008
Olsen_Astral_3P	yeast	F vs E	0.0959	0.1255	0.1233	0.1208	0.1208	0.1362	+0.0296	-0.0022	-0.0025	+0	+0.0154
Olsen_Exploris_3P	ecoli	B vs A	0.2033	0.2180	0.2632	0.2277	0.2277	0.2806	+0.0146	+0.0452	-0.0355	+0	+0.0529
Olsen_Exploris_3P	ecoli	D vs C	0.0636	0.0579	0.0517	0.0486	0.0486	0.0599	-0.0057	-0.0062	-0.0031	+0	+0.0113
Olsen_Exploris_3P	ecoli	F vs E	0.4584	0.3290	0.4916	0.5005	0.5005	0.5485	-0.1294	+0.1626	+0.0090	+0	+0.0480
Olsen_Exploris_3P	human	B vs A	0.0646	0.0600	0.0674	0.0691	0.0691	0.0696	-0.0046	+0.0074	+0.0016	+0	+0.0005
Olsen_Exploris_3P	human	D vs C	0.0301	0.0410	0.0343	0.0433	0.0433	0.0362	+0.0109	-0.0066	+0.0090	+0	-0.0072
Olsen_Exploris_3P	human	F vs E	0.0759	0.0706	0.0798	0.0824	0.0824	0.0848	-0.0053	+0.0093	+0.0025	+0	+0.0024
Olsen_Exploris_3P	yeast	B vs A	0.2336	0.2170	0.2340	0.2174	0.2174	0.2370	-0.0166	+0.0170	-0.0166	+0	+0.0195
Olsen_Exploris_3P	yeast	D vs C	0.0715	0.0783	0.0777	0.0738	0.0738	0.1123	+0.0068	-0.0006	-0.0039	+0	+0.0385
Olsen_Exploris_3P	yeast	F vs E	0.5309	0.4419	0.4386	0.4304	0.4304	0.4951	-0.0891	-0.0032	-0.0082	+0	+0.0646
SCIEX_3P	ecoli	B vs A	0.2191	0.2872	0.2279	0.2223	0.2223	0.3420	+0.0682	-0.0593	-0.0056	+0	+0.1197
SCIEX_3P	ecoli	C vs A	0.2647	0.3315	0.2466	0.2435	0.2435	0.3724	+0.0668	-0.0849	-0.0031	+0	+0.1289
SCIEX_3P	ecoli	C vs B	0.0574	0.0687	0.0330	0.0528	0.0528	0.0440	+0.0113	-0.0357	+0.0198	+0	-0.0087
SCIEX_3P	human	B vs A	0.0657	0.0603	0.0448	0.0488	0.0488	0.0412	-0.0054	-0.0154	+0.0040	+0	-0.0076
SCIEX_3P	human	C vs A	0.0731	0.0720	0.0496	0.0608	0.0608	0.0500	-0.0011	-0.0225	+0.0112	+0	-0.0108
SCIEX_3P	human	C vs B	0.0556	0.0651	0.0470	0.0457	0.0457	0.0499	+0.0094	-0.0181	-0.0013	+0	+0.0042
SCIEX_3P	yeast	B vs A	0.1098	0.0964	0.0764	0.0675	0.0675	0.0897	-0.0134	-0.0199	-0.0090	+0	+0.0222
SCIEX_3P	yeast	C vs A	0.2938	0.3209	0.2538	0.2592	0.2592	0.3683	+0.0271	-0.0671	+0.0055	+0	+0.1090
SCIEX_3P	yeast	C vs B	0.2531	0.3033	0.2534	0.2754	0.2754	0.3552	+0.0501	-0.0498	+0.0220	+0	+0.0798

Metric: runtime

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop	% current vs v0.6.4	% current vs v0.6.7	% current vs v0.7.0	% current vs v0.7.4	% current vs develop
APMS_Astral	247.2300	331.1700	190.8900	176.4300	175.4100	176.8800	-70.3500	-154.2900	-14.0100	+0.4500	+1.4700	-28.4553%	-46.5894%	-7.3393%	+0.2551%	+0.8380%
KEAP1KO_Eclipse	24.0700	17.3200	19.8700	17.1300	18.7000	20.2200	-3.8500	+2.9000	+0.3500	+3.0900	+1.5200	-15.9950%	+16.7436%	+1.7614%	+18.0385%	+8.1283%
MTAC_3P_Alternating	12.7500	9.0700	8.3600	9.2900	9.5800	9.0400	-3.7100	-0.0300	+0.6800	-0.2500	-0.5400	-29.0980%	-0.3308%	+8.1340%	-2.6911%	-5.6367%
MTAC_3P_Standard	12.3100	8.9600	9.6600	10.8100	9.5500	13.3200	+1.0100	+4.3600	+3.6600	+2.5100	+3.7700	+8.2047%	+48.6607%	+37.8882%	+23.2192%	+39.4764%
MTAC_Yeast_Alternating_3min		4.2300	4.4100	4.9400	4.2600	4.7100		+0.4800	+0.3000	-0.2300	+0.4500		+11.3475%	+6.8027%	-4.6559%	+10.5634%
MTAC_Yeast_Alternating_5min	5.3800	4.3800	4.7500	4.5400	4.5000	5.1600	-0.2200	+0.7800	+0.4100	+0.6200	+0.6600	-4.0892%	+17.8082%	+8.6316%	+13.6564%	+14.6667%
MTAC_Yeast_Standard_3min	5.4300	4.1400	4.4400	4.6600	4.1400	4.4400	-0.9900	+0.3000	+0	-0.2200	+0.3000	-18.2320%	+7.2464%	+0%	-4.7210%	+7.2464%
MTAC_Yeast_Standard_5min	5.5500	4.4200	4.5300	4.4600	4.3200	4.4400	-1.1100	+0.0200	-0.0900	-0.0200	+0.1200	-20.0000%	+0.4525%	-1.9868%	-0.4484%	+2.7778%
Olsen_Astral_3P	76.4000	62.9200	70.0100	64.7500	66.0200	66.9600	-9.4400	+4.0400	-3.0500	+2.2100	+0.9400	-12.3560%	+6.4209%	-4.3565%	+3.4131%	+1.4238%
Olsen_Exploris_3P	27.6600	19.7600	18.3200	19.2800	17.4100	20.0400	-7.6200	+0.2800	+1.7200	+0.7600	+2.6300	-27.5488%	+1.4170%	+9.3886%	+3.9419%	+15.1063%
SCIEX_3P	30.2900	25.6900	26.5600	29.3700	25.9700	28.6600	-1.6300	+2.9700	+2.1000	-0.7100	+2.6900	-5.3813%	+11.5609%	+7.9066%	-2.4174%	+10.3581%
SCP_Astral_1000pg_12ms	5.7900	4.5900	4.6500	4.0900	4.2500	5.5300	-0.2600	+0.9400	+0.8800	+1.4400	+1.2800	-4.4905%	+20.4793%	+18.9247%	+35.2078%	+30.1176%
SCP_Astral_1000pg_24ms	6.2600		4.4000	5.8800	4.5300	4.7200	-1.5400		+0.3200	-1.1600	+0.1900	-24.6006%		+7.2727%	-19.7279%	+4.1943%
SCP_Astral_1000pg_3ms	4.5200	3.7300	4.8000	3.6400	3.8500	4.1000	-0.4200	+0.3700	-0.7000	+0.4600	+0.2500	-9.2920%	+9.9196%	-14.5833%	+12.6374%	+6.4935%
SCP_Astral_1000pg_6ms	5.7400	3.5100	3.9200	3.4400	3.6000	3.7200	-2.0200	+0.2100	-0.2000	+0.2800	+0.1200	-35.1916%	+5.9829%	-5.1020%	+8.1395%	+3.3333%
SCP_Astral_10ng_12ms	7.0700	5.5300	5.5100	5.7400	6.3500	6.0100	-1.0600	+0.4800	+0.5000	+0.2700	-0.3400	-14.9929%	+8.6799%	+9.0744%	+4.7038%	-5.3543%
SCP_Astral_10ng_24ms	7.5900	5.7300	6.1400	5.5400	6	7.3700	-0.2200	+1.6400	+1.2300	+1.8300	+1.3700	-2.8986%	+28.6213%	+20.0326%	+33.0325%	+22.8333%
SCP_Astral_10ng_6ms	7.3800	4.9300	4.6300	5.6200	4.6500	4.8700	-2.5100	-0.0600	+0.2400	-0.7500	+0.2200	-34.0108%	-1.2170%	+5.1836%	-13.3452%	+4.7312%
SCP_Astral_10ng_ms	6.4500	4.6700	4.3000	4.4100	4.3800	4.8300	-1.6200	+0.1600	+0.5300	+0.4200	+0.4500	-25.1163%	+3.4261%	+12.3256%	+9.5238%	+10.2740%
SCP_Astral_250pg_12ms	4.7400		3.6600	3.3900	3.5300	3.6500	-1.0900		-0.0100	+0.2600	+0.1200	-22.9958%		-0.2732%	+7.6696%	+3.3994%
SCP_Astral_250pg_24ms	5.2600		3.8400	3.7600	4.1400	4.2000	-1.0600		+0.3600	+0.4400	+0.0600	-20.1521%		+9.3750%	+11.7021%	+1.4493%
SCP_Astral_250pg_3ms	4.6500	3.4300	3.7100	3.4500	3.6400	3.5400	-1.1100	+0.1100	-0.1700	+0.0900	-0.1000	-23.8710%	+3.2070%	-4.5822%	+2.6087%	-2.7473%
SCP_Astral_250pg_6ms	4.1700	3.2900	3.6900	3.2700	3.4500	3.7200	-0.4500	+0.4300	+0.0300	+0.4500	+0.2700	-10.7914%	+13.0699%	+0.8130%	+13.7615%	+7.8261%
SCP_Astral_500pg_12ms	5.2800	3.5300	3.6000	3.4900	3.5000	3.7400	-1.5400	+0.2100	+0.1400	+0.2500	+0.2400	-29.1667%	+5.9490%	+3.8889%	+7.1633%	+6.8571%
SCP_Astral_500pg_24ms	5.5100	3.8200	4.1500	4.8100	4.3600	4.6100	-0.9000	+0.7900	+0.4600	-0.2000	+0.2500	-16.3339%	+20.6806%	+11.0843%	-4.1580%	+5.7339%
SCP_Astral_500pg_3ms	4.7300		3.4600	3.5700	3.5900	3.9600	-0.7700		+0.5000	+0.3900	+0.3700	-16.2791%		+14.4509%	+10.9244%	+10.3064%
SCP_Astral_500pg_6ms	4.6500	3.6200	3.7300	3.7800	3.3800	3.5600	-1.0900	-0.0600	-0.1700	-0.2200	+0.1800	-23.4409%	-1.6575%	-4.5576%	-5.8201%	+5.3254%
SCP_Astral_MBR	9.0400		6.5500	6.1000	6.4000	6.9900	-2.0500		+0.4400	+0.8900	+0.5900	-22.6770%		+6.7176%	+14.5902%	+9.2187%
Seer_Astral_45	100.3500	65.6700	60.0400	48.7000	56.2500	59.8900	-40.4600	-5.7800	-0.1500	+11.1900	+3.6400	-40.3189%	-8.8016%	-0.2498%	+22.9774%	+6.4711%
Seer_Astral_single		4.4700	4.1400	5.5800	4.9000	6.0400		+1.5700	+1.9000	+0.4600	+1.1400		+35.1230%	+45.8937%	+8.2437%	+23.2653%
YEAST_KO_Astral	235.6300	252.0700	163.6800	143.2300	136.9900	162.6400	-72.9900	-89.4300	-1.0400	+19.4100	+25.6500	-30.9765%	-35.4782%	-0.6354%	+13.5516%	+18.7240%
EWZ_2P_MBR_Exploris	29	23.3100	24.4800		22.6000
EWZ_2P_MBR_Exploris				26.1800		26.1100				-0.0700					-0.2674%
EWZ_2P_MBR_Exploris_Human				12.9100		13.2100				+0.3000					+2.3238%
EWZ_2P_MBR_Exploris_YeastHuman				12.0600		15.2100				+3.1500					+26.1194%
EWZ_2P_noMBR_Exploris	27.1100	22.0100	21.8700		22.5600
MacCoss_Eclipse_Normalization_noNorm				27.5100		27.5500				+0.0400					+0.1454%
MacCoss_Eclipse_Normalization_yesNorm				27.6700		27.6500				-0.0200					-0.0723%

APMS_Astral

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

APMS_Astral_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

EWZ_2P_MBR_Exploris

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

EWZ_2P_MBR_Exploris_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

EWZ_2P_MBR_Exploris_Human

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

EWZ_2P_MBR_Exploris_YeastHuman

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

KEAP1KO_Eclipse

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

KEAP1KO_Eclipse_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

MTAC_3P_Alternating

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_3P_Alternating_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

MTAC_3P_Standard

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_3P_Standard_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

MTAC_Yeast_Alternating_3min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Alternating_3min_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

MTAC_Yeast_Alternating_5min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Alternating_5min_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

MTAC_Yeast_Standard_3min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Standard_3min_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

MTAC_Yeast_Standard_5min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Standard_5min_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

MacCoss_Eclipse_Normalization_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

MacCoss_Eclipse_Normalization_noNorm

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MacCoss_Eclipse_Normalization_yesNorm

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Olsen_Astral_3P

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Olsen_Astral_3P_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

Olsen_Exploris_3P

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Olsen_Exploris_3P_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCIEX_3P

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCIEX_3P_Entrapment

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_12ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_1000pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_24ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_1000pg_3ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_3ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_1000pg_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_6ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_10ng_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_12ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_10ng_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_24ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_10ng_3ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_10ng_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_6ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_10ng_ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_12ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_250pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_24ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_250pg_3ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_250pg_6ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_500pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_12ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_500pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_24ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_500pg_3ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_3ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_500pg_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_6ms_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

SCP_Astral_MBR

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_MBR_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

Seer_Astral_45

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Seer_Astral_45_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

Seer_Astral_single

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Seer_Astral_single_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png

YEAST_KO_Astral

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png

protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png

protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png

protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

YEAST_KO_Astral_Entrapment

efdr_comparison_global_pg_score.png

efdr_comparison_global_prob.png

efdr_comparison_pg_score.png

efdr_comparison_prec_prob.png