Regression Metrics Report

Versions: v0.6.4, v0.6.6, v0.6.7, v0.7.0, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs v0.6.7 % current vs v0.7.0 % current vs develop
APMS_Astral 5499336 7770128 7773512 7737757 6253241
KEAP1KO_Eclipse 1096494 1311411 1307005 1311955 1293541
MTAC_3P_Alternating 586322 616475 615762 610710 599881
MTAC_3P_Standard 596590 623500 623022 617574 607435
MTAC_Yeast_Alternating_3min 137143 137548 136839 135560
MTAC_Yeast_Alternating_5min 155641 156733 156551 156509 155401
MTAC_Yeast_Standard_3min 138509 139777 139385 139292 137787
MTAC_Yeast_Standard_5min 158962 158983 158732 159160 157922
Olsen_Astral_3P 3282083 3760070 3760832 3714135 3638372
Olsen_Exploris_3P 1022736 1155533 1154669 1123873 1184084
SCIEX_3P 672242 749418 749525 722698 714454
SCP_Astral_1000pg_12ms 40882 41855 41700 42425 42100
SCP_Astral_1000pg_24ms 41069 42339 42402 42023 41152
SCP_Astral_1000pg_3ms 8740 23115 23115 23015 22913
SCP_Astral_1000pg_6ms 16935 17553 17553 18409 18348
SCP_Astral_10ng_12ms 99908 102934 102891 98983 98648
SCP_Astral_10ng_24ms 71098 72525 72728 71445 71126
SCP_Astral_10ng_6ms 115157 117282 117316 114322 113392
SCP_Astral_10ng_ms 105704 106497 106497 105622 104512
SCP_Astral_250pg_12ms 10194 10806 10806 11238 11233
SCP_Astral_250pg_24ms 14807 15433 15433 16041 15699
SCP_Astral_250pg_3ms 1261 2032 2032 2450 2386
SCP_Astral_250pg_6ms 1436 4783 4783 5690 5731
SCP_Astral_500pg_12ms 21710 21895 21895 22580 22463
SCP_Astral_500pg_24ms 25860 26143 26143 26260 25625
SCP_Astral_500pg_3ms 3484 6898 6834
SCP_Astral_500pg_6ms 10699 11474 11474 12882 12889
SCP_Astral_MBR 92167 93648 93585 91884 90838
Seer_Astral_45 2512737 3122633 3124006 3135497 2970421
Seer_Astral_single 56522 56699 55793 55891
YEAST_KO_Astral 16088274 20363242 20393787 19199790 17648311
EWZ_2P_MBR_Exploris 1662994 1805248 1805470 1794012 1775346
EWZ_2P_MBR_Exploris 1775346
EWZ_2P_MBR_Exploris_Human 836525
EWZ_2P_MBR_Exploris_YeastHuman 913949
EWZ_2P_noMBR_Exploris 1608906 1770759 1770319 1769221 1775346

Metric: identification.precursors.unique

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs v0.6.7 % current vs v0.7.0 % current vs develop
APMS_Astral 246168 430621 430774 397213 355853
KEAP1KO_Eclipse 111504 133648 133619 131359 132031
MTAC_3P_Alternating 108267 117420 117352 114659 114816
MTAC_3P_Standard 110265 118733 118693 115800 116148
MTAC_Yeast_Alternating_3min 48709 48858 49032 48995
MTAC_Yeast_Alternating_5min 53969 55370 55075 55840 56132
MTAC_Yeast_Standard_3min 48621 50039 49665 50289 50415
MTAC_Yeast_Standard_5min 55060 56122 55919 56707 56827
Olsen_Astral_3P 198770 231187 231103 234505 234149
Olsen_Exploris_3P 51272 58902 58784 55047 58593
SCIEX_3P 82206 93832 93920 87927 87858
SCP_Astral_1000pg_12ms 14440 15016 14958 15249 15707
SCP_Astral_1000pg_24ms 14483 15025 15065 14916 15070
SCP_Astral_1000pg_3ms 8740 9376 9376 9389 9364
SCP_Astral_1000pg_6ms 8898 9259 9259 9784 9810
SCP_Astral_10ng_12ms 34865 36293 36297 34342 34425
SCP_Astral_10ng_24ms 24649 25391 25466 25119 25223
SCP_Astral_10ng_6ms 40156 41556 41545 40043 40026
SCP_Astral_10ng_ms 36688 37676 37676 37649 37457
SCP_Astral_250pg_12ms 3666 3949 3949 4209 4246
SCP_Astral_250pg_24ms 5299 5611 5611 5855 6066
SCP_Astral_250pg_3ms 675 721 721 908 879
SCP_Astral_250pg_6ms 1436 1738 1738 2145 2163
SCP_Astral_500pg_12ms 7794 7972 7972 8252 8406
SCP_Astral_500pg_24ms 9158 9342 9342 9371 9414
SCP_Astral_500pg_3ms 1846 2600 2586
SCP_Astral_500pg_6ms 3874 4155 4155 4774 4805
SCP_Astral_MBR 24110 25035 24991 24570 24526
Seer_Astral_45 69584 89971 90103 87204 87511
Seer_Astral_single 56522 56699 55793 55891
YEAST_KO_Astral 66823 87992 87888 87428 86437
EWZ_2P_MBR_Exploris 50700 56121 56145 54665 55147
EWZ_2P_MBR_Exploris 55147
EWZ_2P_MBR_Exploris_Human 48475
EWZ_2P_MBR_Exploris_YeastHuman 51177
EWZ_2P_noMBR_Exploris 50591 56321 56328 55060 55147

Metric: identification.protein_groups.total

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs v0.6.7 % current vs v0.7.0 % current vs develop
APMS_Astral 603278 723191 724941 730564 648553
KEAP1KO_Eclipse 87920 92814 92888 93982 93441
MTAC_3P_Alternating 63773 64043 63974 63611 63015
MTAC_3P_Standard 64317 64591 64464 64219 63385
MTAC_Yeast_Alternating_3min 12100 12067 11970 11940
MTAC_Yeast_Alternating_5min 12432 12411 12471 12362 12335
MTAC_Yeast_Standard_3min 12008 12020 12047 11960 11933
MTAC_Yeast_Standard_5min 12561 12508 12465 12477 12410
Olsen_Astral_3P 236395 245754 245756 242430 240719
Olsen_Exploris_3P 146224 153802 153534 153990 155827
SCIEX_3P 70810 74209 74366 72157 71550
SCP_Astral_1000pg_12ms 9163 9538 9528 9585 9334
SCP_Astral_1000pg_24ms 9298 9857 9761 9412 9553
SCP_Astral_1000pg_3ms 2450 6084 6084 6247 6116
SCP_Astral_1000pg_6ms 4703 4588 4588 4958 4923
SCP_Astral_10ng_12ms 16190 16202 16280 16025 16055
SCP_Astral_10ng_24ms 13599 13792 13841 13688 13671
SCP_Astral_10ng_6ms 17017 17179 17178 16913 16777
SCP_Astral_10ng_ms 16252 16276 16276 16117 15961
SCP_Astral_250pg_12ms 3647 3913 3913 3864 3539
SCP_Astral_250pg_24ms 4300 4603 4603 4797 4977
SCP_Astral_250pg_3ms 576 22 22 936 741
SCP_Astral_250pg_6ms 637 2080 2080 2029 2046
SCP_Astral_500pg_12ms 6245 6346 6346 6016 6127
SCP_Astral_500pg_24ms 6722 6729 6729 7012 7023
SCP_Astral_500pg_3ms 982 2365 2177
SCP_Astral_500pg_6ms 3708 4007 4007 4045 3918
SCP_Astral_MBR 20165 20214 20129 20074 19851
Seer_Astral_45 225377 241502 241455 241952 237529
Seer_Astral_single 4662 4685 4700 4632
YEAST_KO_Astral 1300836 1388950 1388263 1327464 1306693
EWZ_2P_MBR_Exploris 239484 245804 246184 245112 244993
EWZ_2P_MBR_Exploris 245452
EWZ_2P_MBR_Exploris_Human 115436
EWZ_2P_MBR_Exploris_YeastHuman 129052
EWZ_2P_noMBR_Exploris 235990 245406 244737 245013 244993

Metric: identification.protein_groups.unique

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs v0.6.7 % current vs v0.7.0 % current vs develop
APMS_Astral 21740 28560 28540 27527 26807
KEAP1KO_Eclipse 7845 8174 8175 8155 8203
MTAC_3P_Alternating 11361 11494 11494 11351 11338
MTAC_3P_Standard 11473 11609 11560 11477 11396
MTAC_Yeast_Alternating_3min 4135 4128 4092 4100
MTAC_Yeast_Alternating_5min 4215 4229 4248 4218 4218
MTAC_Yeast_Standard_3min 4075 4100 4134 4090 4083
MTAC_Yeast_Standard_5min 4249 4249 4237 4244 4231
Olsen_Astral_3P 13820 14399 14378 14293 14296
Olsen_Exploris_3P 7255 7623 7582 7340 7479
SCIEX_3P 8652 9081 9109 8679 8618
SCP_Astral_1000pg_12ms 3245 3397 3389 3411 3318
SCP_Astral_1000pg_24ms 3254 3466 3433 3291 3434
SCP_Astral_1000pg_3ms 2450 2396 2396 2450 2397
SCP_Astral_1000pg_6ms 2508 2436 2436 2634 2642
SCP_Astral_10ng_12ms 5579 5627 5656 5504 5546
SCP_Astral_10ng_24ms 4721 4803 4838 4783 4811
SCP_Astral_10ng_6ms 5846 5950 5949 5843 5802
SCP_Astral_10ng_ms 5611 5655 5655 5596 5572
SCP_Astral_250pg_12ms 1292 1424 1424 1406 1288
SCP_Astral_250pg_24ms 1568 1660 1660 1758 1873
SCP_Astral_250pg_3ms 307 8 8 350 283
SCP_Astral_250pg_6ms 637 756 756 751 766
SCP_Astral_500pg_12ms 2207 2275 2275 2169 2230
SCP_Astral_500pg_24ms 2403 2388 2388 2477 2539
SCP_Astral_500pg_3ms 525 902 828
SCP_Astral_500pg_6ms 1318 1447 1447 1486 1435
SCP_Astral_MBR 4708 4754 4720 4712 4719
Seer_Astral_45 5802 6299 6297 6122 6137
Seer_Astral_single 4662 4685 4700 4632
YEAST_KO_Astral 4565 4793 4795 4676 4691
EWZ_2P_MBR_Exploris 6831 7038 7059 6953 7009
EWZ_2P_MBR_Exploris 7094
EWZ_2P_MBR_Exploris_Human 6178
EWZ_2P_MBR_Exploris_YeastHuman 6893
EWZ_2P_noMBR_Exploris 6858 7115 7077 7019 7009

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
APMS_Astral_Entrapment -0.0009
EWZ_2P_MBR_Exploris_Entrapment -0.0006 -0.0003 -0.0004 -0.0002 -0.0011 -0.0011 -0.0006 -0.0009 -0.0007 -0.0009 +0
KEAP1KO_Eclipse_Entrapment -0.0007
MTAC_3P_Alternating_Entrapment -0.0005 -0.0001 -0.0001 -0.0010 -0.0008
MTAC_3P_Standard_Entrapment -0.0014 0.0002 0.0004 -0.0006 -0.0007
MTAC_Yeast_Alternating_3min_Entrapment -0.0020 -0.0015 -0.0019 -0.0026
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0013 -0.0013 -0.0014 -0.0015
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0013 -0.0014 -0.0012 -0.0020
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0020 -0.0024 -0.0025
Olsen_Astral_3P_Entrapment -0.0015 -0.0008 -0.0013 -0.0015
Olsen_Exploris_3P_Entrapment -0.0002 0.0003 -0.0011 0.0005
SCIEX_3P_Entrapment -0.0005 -0.0001 -0.0004 -0.0006
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0030 -0.0020
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0033 -0.0032 -0.0046
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0037 -0.0048 -0.0030 -0.0046
SCP_Astral_1000pg_6ms_Entrapment -0.0002 -0.0011 -0.0011 -0.0036 -0.0026
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0023 -0.0017 -0.0024
SCP_Astral_10ng_24ms_Entrapment -0.0020 0.0009 -0.0015 -0.0013
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0027 -0.0018 -0.0018
SCP_Astral_10ng_6ms_Entrapment -0.0008 0.0001 -0.0021 -0.0012
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0040 0.0003 -0.0052
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0012 -0.0024 -0.0031
SCP_Astral_250pg_3ms_Entrapment -0.0069 0
SCP_Astral_250pg_6ms_Entrapment -0.0051 -0.0026 -0.0050
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0020 -0.0010 -0.0027 -0.0026
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0024 -0.0012 -0.0011
SCP_Astral_500pg_3ms_Entrapment -0.0013 -0.0023 -0.0035
SCP_Astral_500pg_6ms_Entrapment -0.0031 -0.0031 -0.0033 -0.0015
SCP_Astral_MBR_Entrapment -0.0026 -0.0020 -0.0014 -0.0022
Seer_Astral_45_Entrapment -0.0023
Seer_Astral_single_Entrapment -0.0022
YEAST_KO_Astral_Entrapment -0.0024 -0.0025 -0.0019 -0.0026 -0.0025

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
APMS_Astral_Entrapment -0.0021
EWZ_2P_MBR_Exploris_Entrapment -0.0010 -0.0031 -0.0011 -0.0008 -0.0026 -0.0014 -0.0004 +0.0017 -0.0003 -0.0006 +0.0012
KEAP1KO_Eclipse_Entrapment -0.0029
MTAC_3P_Alternating_Entrapment -0.0010 -0.0006 -0.0011 0.0005 0.0007
MTAC_3P_Standard_Entrapment -0.0013 -0.0022 -0.0025 -0.0029 -0.0035
MTAC_Yeast_Alternating_3min_Entrapment -0.0050 -0.0066 -0.0053 -0.0048
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0038 -0.0038 -0.0048 -0.0034
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0050 -0.0047 -0.0020 -0.0028
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0045 -0.0056 -0.0041
Olsen_Astral_3P_Entrapment -0.0041 -0.0035 -0.0023 -0.0038
Olsen_Exploris_3P_Entrapment -0.0029 -0.0002 -0.0028 -0.0009
SCIEX_3P_Entrapment -0.0031 -0.0038 -0.0025 -0.0034
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0042 -0.0042 -0.0051
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0058 -0.0070 -0.0070
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0036 -0.0059 -0.0072 -0.0084
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0049 -0.0049 -0.0043 -0.0045
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0049 -0.0040 -0.0054
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0023 -0.0016 -0.0045
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0073 -0.0066 -0.0061
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0020 -0.0054 -0.0046
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0076 -0.0034 -0.0064
SCP_Astral_250pg_24ms_Entrapment -0.0042 -0.0042 -0.0026 -0.0013
SCP_Astral_250pg_3ms_Entrapment -0.0028 0 0 -0.0085 0
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0067 -0.0067 -0.0084 -0.0088
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0054 -0.0040 0.0014 -0.0020
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0001 -0.0051 -0.0062
SCP_Astral_500pg_3ms_Entrapment -0.0042 0.0071 0.0020 -0.0001
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0045 -0.0045 -0.0008 -0.0056
SCP_Astral_MBR_Entrapment -0.0059 -0.0030 -0.0025 -0.0050
Seer_Astral_45_Entrapment -0.0049
Seer_Astral_single_Entrapment -0.0074
YEAST_KO_Astral_Entrapment -0.0065 -0.0049 -0.0055 -0.0034 -0.0047

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
APMS_Astral_Entrapment -0.0002
EWZ_2P_MBR_Exploris_Entrapment -0.0005 -0.0004 -0.0004 -0.0005 -0.0013 -0.0013 -0.0007 -0.0008 -0.0008 -0.0008 +0
KEAP1KO_Eclipse_Entrapment -0.0003
MTAC_3P_Alternating_Entrapment -0.0001 0.0003 0.0003 -0.0002 -0.0001
MTAC_3P_Standard_Entrapment -0.0009 0.0001 0.0002 -0.0004 -0.0003
MTAC_Yeast_Alternating_3min_Entrapment -0.0013 -0.0010 -0.0013 -0.0014
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0008 -0.0008 -0.0010 -0.0008
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0007 -0.0007 -0.0008 -0.0011
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0010 -0.0015 -0.0015
Olsen_Astral_3P_Entrapment -0.0008 -0.0003 -0.0008 -0.0008
Olsen_Exploris_3P_Entrapment -0.0004 0.0005 -0.0006 -0.0000
SCIEX_3P_Entrapment -0.0005 -0.0002 -0.0002 -0.0004
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0030 -0.0019
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0028 -0.0031 -0.0037
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0022 -0.0029 -0.0026 -0.0034
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0006 -0.0006 -0.0028 -0.0024
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0012 -0.0010 -0.0016
SCP_Astral_10ng_24ms_Entrapment -0.0014 0.0004 -0.0012 -0.0008
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0020 -0.0016 -0.0015
SCP_Astral_10ng_6ms_Entrapment -0.0005 0.0002 -0.0012 -0.0008
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0027 -0.0003 -0.0031
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0008 -0.0013 -0.0014
SCP_Astral_250pg_3ms_Entrapment -0.0060 0
SCP_Astral_250pg_6ms_Entrapment -0.0037 -0.0021 -0.0030
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0012 -0.0004 -0.0020 -0.0013
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0017 -0.0018 -0.0017
SCP_Astral_500pg_3ms_Entrapment 0.0019 -0.0004 -0.0016
SCP_Astral_500pg_6ms_Entrapment -0.0025 -0.0025 -0.0019 -0.0010
SCP_Astral_MBR_Entrapment -0.0017 -0.0015 -0.0008 -0.0013
Seer_Astral_45_Entrapment -0.0011
Seer_Astral_single_Entrapment -0.0022
YEAST_KO_Astral_Entrapment -0.0013 -0.0006 -0.0006 -0.0007 -0.0007

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
APMS_Astral_Entrapment -0.0012
EWZ_2P_MBR_Exploris_Entrapment -0.0002 -0.0019 -0.0007 -0.0001 -0.0012 -0.0005 -0.0003 +0.0014 +0.0003 -0.0004 +0.0007
KEAP1KO_Eclipse_Entrapment -0.0016
MTAC_3P_Alternating_Entrapment -0.0001 0.0001 -0.0002 0.0003 0.0002
MTAC_3P_Standard_Entrapment -0.0008 -0.0012 -0.0014 -0.0021 -0.0021
MTAC_Yeast_Alternating_3min_Entrapment -0.0030 -0.0036 -0.0034 -0.0030
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0021 -0.0021 -0.0025 -0.0013
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0032 -0.0035 -0.0014 -0.0016
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0027 -0.0037 -0.0021
Olsen_Astral_3P_Entrapment -0.0024 -0.0021 -0.0019 -0.0024
Olsen_Exploris_3P_Entrapment -0.0026 0.0006 -0.0017 -0.0016
SCIEX_3P_Entrapment -0.0036 -0.0032 -0.0021 -0.0028
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0023 -0.0032 -0.0032
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0056 -0.0058 -0.0043
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0016 -0.0033 -0.0041 -0.0039
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0035 -0.0035 -0.0040 -0.0040
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0032 -0.0031 -0.0042
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0014 -0.0014 -0.0025
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0046 -0.0038 -0.0033
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0019 -0.0038 -0.0029
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0041 -0.0019 -0.0030
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0032 -0.0003 -0.0001
SCP_Astral_250pg_3ms_Entrapment -0.0060 -0.0082 -0.0082 -0.0047 0
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0068 -0.0068 -0.0055 -0.0047
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0040 -0.0035 -0.0007 -0.0028
SCP_Astral_500pg_24ms_Entrapment -0.0019 0.0001 -0.0043 -0.0045
SCP_Astral_500pg_3ms_Entrapment -0.0032 0.0066 0.0028 0.0003
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0022 -0.0022 0.0009 -0.0028
SCP_Astral_MBR_Entrapment -0.0024 -0.0017 -0.0022 -0.0028
Seer_Astral_45_Entrapment -0.0029
Seer_Astral_single_Entrapment -0.0074
YEAST_KO_Astral_Entrapment -0.0041 -0.0029 -0.0030 -0.0016 -0.0021

Metric: ftr.precursors.additional_IDs

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
EWZ_2P_MBR_Exploris 24872

Metric: ftr.precursors.additional_yeast_IDs

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
EWZ_2P_MBR_Exploris 767

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131 0.0067 0.0047 0.0115 0
EWZ_2P_MBR_Exploris 0.0308

Metric: ftr.protein_groups.additional_IDs

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
EWZ_2P_MBR_Exploris 964

Metric: ftr.protein_groups.additional_yeast_IDs

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
EWZ_2P_MBR_Exploris 88

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476 0.4086 0.1485 0 0
EWZ_2P_MBR_Exploris 0.0913

keap1.precursors

Dataset Gene Run v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ v0.6.6 vs v0.6.4 Δ v0.6.7 vs v0.6.6 Δ v0.7.0 vs v0.6.7 Δ develop vs v0.7.0 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1 1 1 1 +1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1 1 1 1 +1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 1 3 3 +0 +1 +2 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 13 13 14 15 +4 +0 +1 +1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 13 13 13 14 +4 +0 +0 +1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 13 13 13 14 +3 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1 1 2 2 +0 +0 +1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1 1 2 2 +0 +0 +1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1 1 2 2 +0 +0 +1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 1 1 +0 +0 +1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 1 1 +0 +0 +1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 0 +0 +0 +0 +0

keap1.protein_groups

Dataset Gene Run v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ v0.6.6 vs v0.6.4 Δ v0.6.7 vs v0.6.6 Δ v0.7.0 vs v0.6.7 Δ develop vs v0.7.0 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 0 0 0 0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 0 0 0 0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 0 1 1 +0 +0 +1 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1 1 1 1 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1 1 1 1 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1 1 1 1 +0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0 0 1 0 +0 +0 +1 -1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0 0 1 1 +0 +0 +1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0 0 1 1 +0 +0 +1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 0 0 +0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 0 0 +0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 0 +0 +0 +0 +0

Metric: cv.precursors.median_cv

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1423 0.1421 0.1400 0.1374
MTAC_3P_Standard 0.1393 0.1363 0.1362 0.1351 0.1324
MTAC_Yeast_Alternating_3min 0.1456 0.1456 0.1424 0.1408
MTAC_Yeast_Alternating_5min 0.1531 0.1402 0.1409 0.1376 0.1355
MTAC_Yeast_Standard_3min 0.1698 0.1644 0.1639 0.1616 0.1597
MTAC_Yeast_Standard_5min 0.1503 0.1369 0.1366 0.1337 0.1323
Olsen_Astral_3P 0.0823 0.0884 0.0884 0.0854 0.0832
Olsen_Exploris_3P 0.1480 0.1500 0.1499 0.1495 0.1505
SCIEX_3P 0.1284 0.1281 0.1282 0.1196 0.1184

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0738 0.0739 0.0727 0.0720
MTAC_3P_Standard 0.0723 0.0704 0.0703 0.0700 0.0688
MTAC_Yeast_Alternating_3min 0.0670 0.0673 0.0660 0.0658
MTAC_Yeast_Alternating_5min 0.0778 0.0596 0.0603 0.0593 0.0588
MTAC_Yeast_Standard_3min 0.0792 0.0772 0.0756 0.0753 0.0762
MTAC_Yeast_Standard_5min 0.0770 0.0567 0.0567 0.0569 0.0568
Olsen_Astral_3P 0.0374 0.0373 0.0373 0.0367 0.0363
Olsen_Exploris_3P 0.1028 0.1020 0.1019 0.1036 0.1027
SCIEX_3P 0.0864 0.0834 0.0832 0.0787 0.0785

fold_change.error.precursors

Dataset Species Condition v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ v0.6.6 vs v0.6.4 Δ v0.6.7 vs v0.6.6 Δ v0.7.0 vs v0.6.7 Δ develop vs v0.7.0 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0690 -0.0694 -0.0765 -0.0777 -0.0024 +0.0005 +0.0070 +0.0012
MTAC_3P_Alternating human A vs B -0.0432 -0.0352 -0.0356 -0.0411 -0.0409 -0.0079 +0.0003 +0.0055 -0.0002
MTAC_3P_Alternating yeast A vs B -0.0026 0.0043 0.0033 -0.0010 0.0009 +0.0017 -0.0010 -0.0023 -0.0001
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1260 -0.1257 -0.1249 -0.1269 +0.0015 -0.0003 -0.0008 +0.0020
MTAC_3P_Standard human A vs B -0.0785 -0.0730 -0.0731 -0.0725 -0.0722 -0.0055 +0.0001 -0.0006 -0.0003
MTAC_3P_Standard yeast A vs B -0.0337 -0.0254 -0.0257 -0.0306 -0.0291 -0.0083 +0.0003 +0.0050 -0.0016
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0684 -0.0684 -0.1013 -0.0961 +0.0114 -0.0000 +0.0329 -0.0052
Olsen_Astral_3P ecoli D vs C -0.2013 -0.2131 -0.2128 -0.2280 -0.2291 +0.0117 -0.0002 +0.0151 +0.0011
Olsen_Astral_3P ecoli F vs E 0.0193 -0.0124 -0.0111 -0.0392 -0.0197 -0.0069 -0.0014 +0.0282 -0.0195
Olsen_Astral_3P human B vs A -0.0036 -0.0104 -0.0103 -0.0408 -0.0422 +0.0067 -0.0001 +0.0305 +0.0014
Olsen_Astral_3P human D vs C -0.3258 -0.3340 -0.3338 -0.3431 -0.3429 +0.0083 -0.0002 +0.0093 -0.0002
Olsen_Astral_3P human F vs E 0.0777 0.0752 0.0753 0.0351 0.0335 -0.0025 +0.0002 -0.0402 -0.0016
Olsen_Astral_3P yeast B vs A 0.0756 0.0863 0.0864 0.0719 0.0731 +0.0108 +0.0001 -0.0145 +0.0012
Olsen_Astral_3P yeast D vs C -0.2263 -0.2274 -0.2278 -0.2316 -0.2278 +0.0011 +0.0004 +0.0038 -0.0038
Olsen_Astral_3P yeast F vs E 0.1940 0.2202 0.2203 0.2012 0.2023 +0.0262 +0.0001 -0.0191 +0.0011
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2234 0.2213 0.2154 0.2365 -0.0038 -0.0021 -0.0059 +0.0211
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0755 -0.0749 -0.0796 -0.0605 +0.0068 -0.0006 +0.0047 -0.0191
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2741 0.2739 0.2498 0.2785 +0.0186 -0.0003 -0.0240 +0.0287
Olsen_Exploris_3P human B vs A 0.0955 0.1004 0.1003 0.0949 0.0883 +0.0049 -0.0001 -0.0054 -0.0067
Olsen_Exploris_3P human D vs C -0.0535 -0.0539 -0.0544 -0.0545 -0.0456 +0.0004 +0.0005 +0.0001 -0.0089
Olsen_Exploris_3P human F vs E 0.1998 0.2053 0.2049 0.2032 0.2036 +0.0054 -0.0004 -0.0017 +0.0004
Olsen_Exploris_3P yeast B vs A 0.0478 0.0464 0.0446 0.0384 0.0225 -0.0014 -0.0018 -0.0062 -0.0160
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1118 -0.1118 -0.1074 -0.1020 +0.0042 +0.0001 -0.0045 -0.0054
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0906 -0.0848 -0.0610 -0.0965 +0.0227 -0.0058 -0.0238 +0.0355
SCIEX_3P ecoli B vs A -0.0531 -0.0718 -0.0727 -0.0768 -0.0773 +0.0187 +0.0009 +0.0041 +0.0006
SCIEX_3P ecoli C vs A -0.0580 -0.0539 -0.0550 -0.0675 -0.0681 -0.0042 +0.0011 +0.0125 +0.0006
SCIEX_3P ecoli C vs B -0.0146 0.0095 0.0095 0.0024 0.0036 -0.0050 -0.0000 -0.0071 +0.0012
SCIEX_3P human B vs A -0.0334 -0.0452 -0.0453 -0.0427 -0.0425 +0.0117 +0.0002 -0.0026 -0.0002
SCIEX_3P human C vs A -0.0804 -0.0564 -0.0567 -0.0616 -0.0618 -0.0241 +0.0003 +0.0049 +0.0003
SCIEX_3P human C vs B -0.0484 -0.0152 -0.0153 -0.0226 -0.0230 -0.0332 +0.0001 +0.0073 +0.0004
SCIEX_3P yeast B vs A -0.0084 -0.0194 -0.0194 -0.0094 -0.0084 +0.0110 -0.0000 -0.0100 -0.0011
SCIEX_3P yeast C vs A -0.1064 -0.0712 -0.0708 -0.0563 -0.0587 -0.0352 -0.0004 -0.0145 +0.0024
SCIEX_3P yeast C vs B -0.0912 -0.0433 -0.0443 -0.0379 -0.0368 -0.0479 +0.0010 -0.0064 -0.0010

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ v0.6.6 vs v0.6.4 Δ v0.6.7 vs v0.6.6 Δ v0.7.0 vs v0.6.7 Δ develop vs v0.7.0 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0665 -0.0663 -0.0738 -0.0733 +0.0011 -0.0002 +0.0076 -0.0005
MTAC_3P_Alternating human A vs B -0.0451 -0.0368 -0.0362 -0.0407 -0.0411 -0.0083 -0.0006 +0.0045 +0.0004
MTAC_3P_Alternating yeast A vs B 0.0016 0.0064 0.0070 -0.0025 -0.0036 +0.0048 +0.0006 -0.0044 +0.0010
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1245 -0.1257 -0.1262 -0.1206 +0.0000 +0.0012 +0.0005 -0.0055
MTAC_3P_Standard human A vs B -0.0772 -0.0708 -0.0711 -0.0706 -0.0701 -0.0064 +0.0004 -0.0005 -0.0005
MTAC_3P_Standard yeast A vs B -0.0322 -0.0248 -0.0239 -0.0317 -0.0310 -0.0075 -0.0009 +0.0078 -0.0007
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0651 -0.0595 -0.0960 -0.0903 +0.0198 -0.0056 +0.0365 -0.0057
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1660 -0.1664 -0.1707 -0.1634 +0.0046 +0.0004 +0.0043 -0.0072
Olsen_Astral_3P ecoli F vs E 0.0601 0.0256 0.0263 -0.0017 0.0172 -0.0344 +0.0006 -0.0246 +0.0154
Olsen_Astral_3P human B vs A -0.0149 -0.0219 -0.0213 -0.0503 -0.0525 +0.0070 -0.0006 +0.0290 +0.0021
Olsen_Astral_3P human D vs C -0.2928 -0.3003 -0.3000 -0.3066 -0.3056 +0.0075 -0.0003 +0.0066 -0.0010
Olsen_Astral_3P human F vs E 0.0700 0.0700 0.0702 0.0300 0.0288 -0.0001 +0.0002 -0.0402 -0.0012
Olsen_Astral_3P yeast B vs A 0.0543 0.0660 0.0667 0.0532 0.0510 +0.0118 +0.0006 -0.0135 -0.0021
Olsen_Astral_3P yeast D vs C -0.1994 -0.1997 -0.1991 -0.2000 -0.1957 +0.0003 -0.0006 +0.0009 -0.0042
Olsen_Astral_3P yeast F vs E 0.1690 0.1963 0.1979 0.1791 0.1803 +0.0273 +0.0016 -0.0188 +0.0012
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2133 0.2094 0.2067 0.2211 -0.0039 -0.0038 -0.0028 +0.0144
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0743 -0.0711 -0.0727 -0.0557 +0.0080 -0.0032 +0.0016 -0.0170
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3042 0.3062 0.2582 0.2654 +0.0484 +0.0020 -0.0481 +0.0073
Olsen_Exploris_3P human B vs A 0.0841 0.0878 0.0872 0.0840 0.0759 +0.0037 -0.0006 -0.0032 -0.0081
Olsen_Exploris_3P human D vs C -0.0502 -0.0508 -0.0513 -0.0505 -0.0421 +0.0006 +0.0005 -0.0008 -0.0084
Olsen_Exploris_3P human F vs E 0.1988 0.2026 0.2024 0.2017 0.2033 +0.0038 -0.0002 -0.0008 +0.0016
Olsen_Exploris_3P yeast B vs A 0.0433 0.0386 0.0439 0.0342 0.0046 -0.0047 +0.0053 -0.0096 -0.0297
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1163 -0.1151 -0.1117 -0.1085 +0.0068 -0.0012 -0.0034 -0.0033
Olsen_Exploris_3P yeast F vs E -0.0534 -0.1043 -0.0939 -0.0850 -0.1172 +0.0509 -0.0104 -0.0089 +0.0322
SCIEX_3P ecoli B vs A -0.0415 -0.0613 -0.0673 -0.0702 -0.0700 +0.0198 +0.0060 +0.0029 -0.0003
SCIEX_3P ecoli C vs A -0.0531 -0.0459 -0.0481 -0.0623 -0.0677 -0.0072 +0.0023 +0.0142 +0.0054
SCIEX_3P ecoli C vs B -0.0149 0.0153 0.0149 0.0041 0.0041 +0.0003 -0.0004 -0.0108 +0.0000
SCIEX_3P human B vs A -0.0318 -0.0450 -0.0455 -0.0407 -0.0408 +0.0132 +0.0005 -0.0048 +0.0001
SCIEX_3P human C vs A -0.0819 -0.0580 -0.0587 -0.0614 -0.0626 -0.0239 +0.0007 +0.0027 +0.0012
SCIEX_3P human C vs B -0.0489 -0.0140 -0.0139 -0.0215 -0.0217 -0.0349 -0.0001 +0.0076 +0.0002
SCIEX_3P yeast B vs A -0.0091 -0.0233 -0.0222 -0.0113 -0.0116 +0.0141 -0.0011 -0.0109 +0.0003
SCIEX_3P yeast C vs A -0.1151 -0.0731 -0.0716 -0.0556 -0.0578 -0.0420 -0.0015 -0.0160 +0.0023
SCIEX_3P yeast C vs B -0.1020 -0.0500 -0.0512 -0.0434 -0.0443 -0.0520 +0.0012 -0.0078 +0.0009

fold_change.variance.precursors

Dataset Species Condition v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ v0.6.6 vs v0.6.4 Δ v0.6.7 vs v0.6.6 Δ v0.7.0 vs v0.6.7 Δ develop vs v0.7.0 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.2986 0.2962 0.3164 0.3078 +0.0367 -0.0024 +0.0202 -0.0086
MTAC_3P_Alternating human A vs B 0.1984 0.2126 0.2153 0.2095 0.2099 +0.0142 +0.0027 -0.0058 +0.0004
MTAC_3P_Alternating yeast A vs B 0.2558 0.2707 0.2675 0.2598 0.2608 +0.0148 -0.0031 -0.0078 +0.0011
MTAC_3P_Standard ecoli A vs B 0.2681 0.3085 0.3123 0.3116 0.2980 +0.0404 +0.0037 -0.0007 -0.0136
MTAC_3P_Standard human A vs B 0.2062 0.2230 0.2226 0.2195 0.2193 +0.0168 -0.0004 -0.0031 -0.0002
MTAC_3P_Standard yeast A vs B 0.2555 0.2741 0.2725 0.2662 0.2680 +0.0186 -0.0015 -0.0063 +0.0017
Olsen_Astral_3P ecoli B vs A 0.5438 0.5988 0.5792 0.6177 0.5756 +0.0550 -0.0196 +0.0384 -0.0420
Olsen_Astral_3P ecoli D vs C 0.3566 0.3951 0.3988 0.3667 0.3500 +0.0384 +0.0037 -0.0321 -0.0167
Olsen_Astral_3P ecoli F vs E 1.1682 1.3605 1.3857 1.3577 1.2411 +0.1923 +0.0252 -0.0279 -0.1166
Olsen_Astral_3P human B vs A 0.2100 0.2539 0.2526 0.2600 0.2564 +0.0439 -0.0013 +0.0074 -0.0036
Olsen_Astral_3P human D vs C 0.2930 0.3416 0.3403 0.3434 0.3356 +0.0486 -0.0013 +0.0030 -0.0078
Olsen_Astral_3P human F vs E 0.3046 0.3584 0.3595 0.3858 0.3801 +0.0538 +0.0011 +0.0262 -0.0056
Olsen_Astral_3P yeast B vs A 0.2937 0.3308 0.3296 0.3425 0.3315 +0.0371 -0.0012 +0.0129 -0.0110
Olsen_Astral_3P yeast D vs C 0.2553 0.2849 0.2827 0.2872 0.2854 +0.0296 -0.0022 +0.0045 -0.0018
Olsen_Astral_3P yeast F vs E 0.4774 0.5563 0.5552 0.5553 0.5384 +0.0788 -0.0011 +0.0001 -0.0169
Olsen_Exploris_3P ecoli B vs A 0.5783 0.6122 0.6229 0.6989 0.5708 +0.0339 +0.0106 +0.0761 -0.1281
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1567 0.1526 0.1660 0.1512 -0.0061 -0.0042 +0.0134 -0.0147
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8085 0.8013 0.9497 0.9575 +0.0041 -0.0071 +0.1483 +0.0078
Olsen_Exploris_3P human B vs A 0.3372 0.3388 0.3409 0.3454 0.3505 +0.0015 +0.0021 +0.0045 +0.0051
Olsen_Exploris_3P human D vs C 0.1096 0.1750 0.1772 0.1685 0.1517 +0.0655 +0.0022 -0.0087 -0.0168
Olsen_Exploris_3P human F vs E 0.3024 0.3305 0.3340 0.3402 0.3353 +0.0280 +0.0035 +0.0062 -0.0049
Olsen_Exploris_3P yeast B vs A 0.6189 0.5961 0.6096 0.6474 0.5768 -0.0228 +0.0135 +0.0378 -0.0706
Olsen_Exploris_3P yeast D vs C 0.1498 0.2462 0.2475 0.2320 0.2479 +0.0964 +0.0013 -0.0155 +0.0159
Olsen_Exploris_3P yeast F vs E 1.0859 1.1525 1.1596 1.3578 1.2751 +0.0666 +0.0071 +0.1982 -0.0827
SCIEX_3P ecoli B vs A 0.5007 0.5347 0.5328 0.4878 0.4827 +0.0340 -0.0019 -0.0450 -0.0051
SCIEX_3P ecoli C vs A 0.5855 0.5991 0.6055 0.5762 0.5418 +0.0136 +0.0064 -0.0293 -0.0344
SCIEX_3P ecoli C vs B 0.1466 0.1463 0.1534 0.1147 0.1067 -0.0003 +0.0071 -0.0387 -0.0080
SCIEX_3P human B vs A 0.1942 0.2132 0.2132 0.1548 0.1520 +0.0190 +0.0000 -0.0584 -0.0028
SCIEX_3P human C vs A 0.2171 0.2455 0.2452 0.1974 0.1943 +0.0284 -0.0003 -0.0478 -0.0031
SCIEX_3P human C vs B 0.1705 0.1985 0.1978 0.1377 0.1340 +0.0280 -0.0007 -0.0601 -0.0037
SCIEX_3P yeast B vs A 0.2341 0.2465 0.2472 0.1858 0.1850 +0.0124 +0.0006 -0.0614 -0.0008
SCIEX_3P yeast C vs A 0.5719 0.6150 0.6338 0.5883 0.5740 +0.0431 +0.0188 -0.0455 -0.0143
SCIEX_3P yeast C vs B 0.4881 0.5513 0.5568 0.5075 0.4971 +0.0632 +0.0055 -0.0494 -0.0103

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ v0.6.6 vs v0.6.4 Δ v0.6.7 vs v0.6.6 Δ v0.7.0 vs v0.6.7 Δ develop vs v0.7.0 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1525 0.1444 0.1262 0.1208 +0.0230 -0.0081 -0.0182 -0.0054
MTAC_3P_Alternating human A vs B 0.0731 0.0757 0.0766 0.0771 0.0815 +0.0026 +0.0009 +0.0005 +0.0043
MTAC_3P_Alternating yeast A vs B 0.1300 0.1123 0.1143 0.1039 0.1122 -0.0177 +0.0020 -0.0104 +0.0083
MTAC_3P_Standard ecoli A vs B 0.1320 0.1244 0.1278 0.1280 0.1196 -0.0076 +0.0034 +0.0002 -0.0084
MTAC_3P_Standard human A vs B 0.0679 0.0706 0.0711 0.0681 0.0716 +0.0026 +0.0005 -0.0030 +0.0035
MTAC_3P_Standard yeast A vs B 0.1262 0.1294 0.1262 0.1335 0.1254 +0.0033 -0.0032 +0.0073 -0.0081
Olsen_Astral_3P ecoli B vs A 0.1924 0.2322 0.2326 0.2190 0.2657 +0.0399 +0.0003 -0.0136 +0.0467
Olsen_Astral_3P ecoli D vs C 0.1089 0.1342 0.1405 0.1197 0.1086 +0.0252 +0.0064 -0.0208 -0.0112
Olsen_Astral_3P ecoli F vs E 0.3405 0.4293 0.4711 0.4575 0.3928 +0.0889 +0.0417 -0.0136 -0.0647
Olsen_Astral_3P human B vs A 0.0420 0.0445 0.0451 0.0485 0.0465 +0.0025 +0.0007 +0.0034 -0.0021
Olsen_Astral_3P human D vs C 0.0549 0.0649 0.0659 0.0612 0.0625 +0.0100 +0.0010 -0.0047 +0.0013
Olsen_Astral_3P human F vs E 0.0528 0.0597 0.0583 0.0583 0.0620 +0.0069 -0.0014 -0.0000 +0.0038
Olsen_Astral_3P yeast B vs A 0.0563 0.0533 0.0589 0.0668 0.0632 -0.0030 +0.0056 +0.0079 -0.0036
Olsen_Astral_3P yeast D vs C 0.0483 0.0505 0.0497 0.0503 0.0513 +0.0023 -0.0008 +0.0006 +0.0010
Olsen_Astral_3P yeast F vs E 0.0959 0.1287 0.1255 0.1233 0.1208 +0.0328 -0.0032 -0.0022 -0.0025
Olsen_Exploris_3P ecoli B vs A 0.2033 0.2490 0.2180 0.2632 0.2277 +0.0457 -0.0310 +0.0452 -0.0355
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0575 0.0579 0.0517 0.0486 -0.0061 +0.0003 -0.0062 -0.0031
Olsen_Exploris_3P ecoli F vs E 0.4584 0.4220 0.3290 0.4916 0.5005 -0.0364 -0.0930 +0.1626 +0.0090
Olsen_Exploris_3P human B vs A 0.0646 0.0587 0.0600 0.0674 0.0691 -0.0059 +0.0013 +0.0074 +0.0016
Olsen_Exploris_3P human D vs C 0.0301 0.0346 0.0410 0.0343 0.0433 +0.0045 +0.0064 -0.0066 +0.0090
Olsen_Exploris_3P human F vs E 0.0759 0.0741 0.0706 0.0798 0.0824 -0.0018 -0.0035 +0.0093 +0.0025
Olsen_Exploris_3P yeast B vs A 0.2336 0.2060 0.2170 0.2340 0.2174 -0.0276 +0.0110 +0.0170 -0.0166
Olsen_Exploris_3P yeast D vs C 0.0715 0.0758 0.0783 0.0777 0.0738 +0.0043 +0.0025 -0.0006 -0.0039
Olsen_Exploris_3P yeast F vs E 0.5309 0.4212 0.4419 0.4386 0.4304 -0.1098 +0.0207 -0.0032 -0.0082
SCIEX_3P ecoli B vs A 0.2191 0.3229 0.2872 0.2279 0.2223 +0.1039 -0.0357 -0.0593 -0.0056
SCIEX_3P ecoli C vs A 0.2647 0.3082 0.3315 0.2466 0.2435 +0.0434 +0.0233 -0.0849 -0.0031
SCIEX_3P ecoli C vs B 0.0574 0.0650 0.0687 0.0330 0.0528 +0.0076 +0.0037 -0.0357 +0.0198
SCIEX_3P human B vs A 0.0657 0.0604 0.0603 0.0448 0.0488 -0.0052 -0.0002 -0.0154 +0.0040
SCIEX_3P human C vs A 0.0731 0.0655 0.0720 0.0496 0.0608 -0.0076 +0.0066 -0.0225 +0.0112
SCIEX_3P human C vs B 0.0556 0.0615 0.0651 0.0470 0.0457 +0.0059 +0.0035 -0.0181 -0.0013
SCIEX_3P yeast B vs A 0.1098 0.0968 0.0964 0.0764 0.0675 -0.0129 -0.0005 -0.0199 -0.0090
SCIEX_3P yeast C vs A 0.2938 0.3167 0.3209 0.2538 0.2592 +0.0229 +0.0042 -0.0671 +0.0055
SCIEX_3P yeast C vs B 0.2531 0.2947 0.3033 0.2534 0.2754 +0.0416 +0.0085 -0.0498 +0.0220

Metric: runtime

Dataset v0.6.4 v0.6.6 v0.6.7 v0.7.0 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs v0.6.7 % current vs v0.7.0 % current vs develop
APMS_Astral 247.2300 244.2700 331.1700 190.8900 175.4100
KEAP1KO_Eclipse 24.0700 22.8000 17.3200 19.8700 18.7000
MTAC_3P_Alternating 12.7500 13.6800 9.0700 8.3600 9.5800
MTAC_3P_Standard 12.3100 13.0600 8.9600 9.6600 9.5500
MTAC_Yeast_Alternating_3min 5.4900 4.2300 4.4100 4.2600
MTAC_Yeast_Alternating_5min 5.3800 4.7200 4.3800 4.7500 4.5000
MTAC_Yeast_Standard_3min 5.4300 5.6500 4.1400 4.4400 4.1400
MTAC_Yeast_Standard_5min 5.5500 4.3000 4.4200 4.5300 4.3200
Olsen_Astral_3P 76.4000 66.2000 62.9200 70.0100 66.0200
Olsen_Exploris_3P 27.6600 23.7200 19.7600 18.3200 17.4100
SCIEX_3P 30.2900 33.2900 25.6900 26.5600 25.9700
SCP_Astral_1000pg_12ms 5.7900 5.9000 4.5900 4.6500 4.2500
SCP_Astral_1000pg_24ms 6.2600 5.2000 4.4000 4.5300
SCP_Astral_1000pg_3ms 4.5200 6.1100 3.7300 4.8000 3.8500
SCP_Astral_1000pg_6ms 5.7400 3.5300 3.5100 3.9200 3.6000
SCP_Astral_10ng_12ms 7.0700 5.6300 5.5300 5.5100 6.3500
SCP_Astral_10ng_24ms 7.5900 8.3600 5.7300 6.1400 6
SCP_Astral_10ng_6ms 7.3800 4.8900 4.9300 4.6300 4.6500
SCP_Astral_10ng_ms 6.4500 5.1900 4.6700 4.3000 4.3800
SCP_Astral_250pg_12ms 4.7400 3.5100 3.6600 3.5300
SCP_Astral_250pg_24ms 5.2600 4.1900 3.8400 4.1400
SCP_Astral_250pg_3ms 4.6500 3.8300 3.4300 3.7100 3.6400
SCP_Astral_250pg_6ms 4.1700 3.3900 3.2900 3.6900 3.4500
SCP_Astral_500pg_12ms 5.2800 3.4900 3.5300 3.6000 3.5000
SCP_Astral_500pg_24ms 5.5100 3.8200 3.8200 4.1500 4.3600
SCP_Astral_500pg_3ms 4.7300 3.4600 3.5900
SCP_Astral_500pg_6ms 4.6500 3.4300 3.6200 3.7300 3.3800
SCP_Astral_MBR 9.0400 6.5500 6.4000
Seer_Astral_45 100.3500 67.8100 65.6700 60.0400 56.2500
Seer_Astral_single 4.3100 4.4700 4.1400 4.9000
YEAST_KO_Astral 235.6300 216.9300 252.0700 163.6800 136.9900
EWZ_2P_MBR_Exploris 29 29.1900 23.3100 24.4800 22.6000
EWZ_2P_MBR_Exploris 22.3200
EWZ_2P_MBR_Exploris_Human 11.8200
EWZ_2P_MBR_Exploris_YeastHuman 12.7700
EWZ_2P_noMBR_Exploris 27.1100 28.3100 22.0100 21.8700 22.5600

EWZ_2P_MBR_Exploris_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png