Regression Metrics Report

Versions: v0.6.4, v0.6.6, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 5499336 7770128 7834374 7263360 +1764024 -506768 -571014 +32.0770% -6.5220% -7.2886%
KEAP1KO_Eclipse 1096494 1311411 1311411 1299237 +202743 -12174 -12174 +18.4901% -0.9283% -0.9283%
MTAC_3P_Alternating 586322 616475 616475 617354 +31032 +879 +879 +5.2927% +0.1426% +0.1426%
MTAC_3P_Standard 596590 623500 623500 624219 +27629 +719 +719 +4.6312% +0.1153% +0.1153%
MTAC_Yeast_Alternating_3min 137143 137143 137260 +117 +117 +0.0853% +0.0853%
MTAC_Yeast_Alternating_5min 155641 156733 156562 157165 +1524 +432 +603 +0.9792% +0.2756% +0.3852%
MTAC_Yeast_Standard_3min 138509 139777 139662 139876 +1367 +99 +214 +0.9869% +0.0708% +0.1532%
MTAC_Yeast_Standard_5min 158962 158983 158983 159668 +706 +685 +685 +0.4441% +0.4309% +0.4309%
Olsen_Astral_3P 3282083 3760070 3760070 3722603 +440520 -37467 -37467 +13.4220% -0.9964% -0.9964%
Olsen_Exploris_3P 1022736 1155533 1155533 1140314 +117578 -15219 -15219 +11.4964% -1.3171% -1.3171%
SCIEX_3P 672242 749418 749418 732409 +60167 -17009 -17009 +8.9502% -2.2696% -2.2696%
SCP_Astral_1000pg_12ms 40882 41855 41855 42910 +2028 +1055 +1055 +4.9606% +2.5206% +2.5206%
SCP_Astral_1000pg_24ms 41069 42339 42344 42066 +997 -273 -278 +2.4276% -0.6448% -0.6565%
SCP_Astral_1000pg_3ms 8740 23115 23115 22953 +14213 -162 -162 +162.6201% -0.7008% -0.7008%
SCP_Astral_1000pg_6ms 16935 17553 17553 18580 +1645 +1027 +1027 +9.7136% +5.8509% +5.8509%
SCP_Astral_10ng_12ms 99908 102934 102934 100731 +823 -2203 -2203 +0.8238% -2.1402% -2.1402%
SCP_Astral_10ng_24ms 71098 72525 72805 71710 +612 -815 -1095 +0.8608% -1.1238% -1.5040%
SCP_Astral_10ng_6ms 115157 117282 117413 116107 +950 -1175 -1306 +0.8250% -1.0019% -1.1123%
SCP_Astral_10ng_ms 105704 106497 106497 105805 +101 -692 -692 +0.0955% -0.6498% -0.6498%
SCP_Astral_250pg_12ms 10194 10806 10806 11276 +1082 +470 +470 +10.6141% +4.3494% +4.3494%
SCP_Astral_250pg_24ms 14807 15433 15433 16043 +1236 +610 +610 +8.3474% +3.9526% +3.9526%
SCP_Astral_250pg_3ms 1261 2032 2032 2553 +1292 +521 +521 +102.4584% +25.6398% +25.6398%
SCP_Astral_250pg_6ms 1436 4783 4783 5704 +4268 +921 +921 +297.2145% +19.2557% +19.2557%
SCP_Astral_500pg_12ms 21710 21895 21895 22247 +537 +352 +352 +2.4735% +1.6077% +1.6077%
SCP_Astral_500pg_24ms 25860 26143 26143 26369 +509 +226 +226 +1.9683% +0.8645% +0.8645%
SCP_Astral_500pg_3ms 3484 6756 +3272 +93.9150%
SCP_Astral_500pg_6ms 10699 11474 11474 12911 +2212 +1437 +1437 +20.6748% +12.5240% +12.5240%
SCP_Astral_MBR 92167 93648 93648 91844 -323 -1804 -1804 -0.3505% -1.9264% -1.9264%
Seer_Astral_45 2512737 3122633 3122633 3128129 +615392 +5496 +5496 +24.4909% +0.1760% +0.1760%
Seer_Astral_single 56522 56522 56232 -290 -290 -0.5131% -0.5131%
YEAST_KO_Astral 16088274 20363242 20387044 19132236 +3043962 -1231006 -1254808 +18.9204% -6.0452% -6.1549%
EWZ_2P_MBR_Exploris 1662994 1805248 1805248 1799472 +136478 -5776 -5776 +8.2068% -0.3200% -0.3200%
EWZ_2P_noMBR_Exploris 1608906 1770759 1770759 1767331 +158425 -3428 -3428 +9.8468% -0.1936% -0.1936%

Metric: identification.precursors.unique

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 246168 430621 431564 388851 +142683 -41770 -42713 +57.9616% -9.6999% -9.8973%
KEAP1KO_Eclipse 111504 133648 133648 134888 +23384 +1240 +1240 +20.9714% +0.9278% +0.9278%
MTAC_3P_Alternating 108267 117420 117420 117607 +9340 +187 +187 +8.6268% +0.1593% +0.1593%
MTAC_3P_Standard 110265 118733 118733 118778 +8513 +45 +45 +7.7205% +0.0379% +0.0379%
MTAC_Yeast_Alternating_3min 48709 48709 49346 +637 +637 +1.3078% +1.3078%
MTAC_Yeast_Alternating_5min 53969 55370 55197 56217 +2248 +847 +1020 +4.1654% +1.5297% +1.8479%
MTAC_Yeast_Standard_3min 48621 50039 49836 50771 +2150 +732 +935 +4.4220% +1.4629% +1.8762%
MTAC_Yeast_Standard_5min 55060 56122 56122 57160 +2100 +1038 +1038 +3.8140% +1.8495% +1.8495%
Olsen_Astral_3P 198770 231187 231187 238931 +40161 +7744 +7744 +20.2048% +3.3497% +3.3497%
Olsen_Exploris_3P 51272 58902 58902 56631 +5359 -2271 -2271 +10.4521% -3.8556% -3.8556%
SCIEX_3P 82206 93832 93832 90420 +8214 -3412 -3412 +9.9920% -3.6363% -3.6363%
SCP_Astral_1000pg_12ms 14440 15016 15016 15484 +1044 +468 +468 +7.2299% +3.1167% +3.1167%
SCP_Astral_1000pg_24ms 14483 15025 15026 14938 +455 -87 -88 +3.1416% -0.5790% -0.5857%
SCP_Astral_1000pg_3ms 8740 9376 9376 9372 +632 -4 -4 +7.2311% -0.0427% -0.0427%
SCP_Astral_1000pg_6ms 8898 9259 9259 9908 +1010 +649 +649 +11.3509% +7.0094% +7.0094%
SCP_Astral_10ng_12ms 34865 36293 36293 34947 +82 -1346 -1346 +0.2352% -3.7087% -3.7087%
SCP_Astral_10ng_24ms 24649 25391 25531 25125 +476 -266 -406 +1.9311% -1.0476% -1.5902%
SCP_Astral_10ng_6ms 40156 41556 41511 40811 +655 -745 -700 +1.6311% -1.7928% -1.6863%
SCP_Astral_10ng_ms 36688 37676 37676 37780 +1092 +104 +104 +2.9765% +0.2760% +0.2760%
SCP_Astral_250pg_12ms 3666 3949 3949 4220 +554 +271 +271 +15.1118% +6.8625% +6.8625%
SCP_Astral_250pg_24ms 5299 5611 5611 5890 +591 +279 +279 +11.1530% +4.9724% +4.9724%
SCP_Astral_250pg_3ms 675 721 721 945 +270 +224 +224 +40% +31.0680% +31.0680%
SCP_Astral_250pg_6ms 1436 1738 1738 2156 +720 +418 +418 +50.1393% +24.0506% +24.0506%
SCP_Astral_500pg_12ms 7794 7972 7972 8079 +285 +107 +107 +3.6567% +1.3422% +1.3422%
SCP_Astral_500pg_24ms 9158 9342 9342 9356 +198 +14 +14 +2.1620% +0.1499% +0.1499%
SCP_Astral_500pg_3ms 1846 2563 +717 +38.8407%
SCP_Astral_500pg_6ms 3874 4155 4155 4795 +921 +640 +640 +23.7739% +15.4031% +15.4031%
SCP_Astral_MBR 24110 25035 25035 24566 +456 -469 -469 +1.8913% -1.8734% -1.8734%
Seer_Astral_45 69584 89971 89971 89109 +19525 -862 -862 +28.0596% -0.9581% -0.9581%
Seer_Astral_single 56522 56522 56232 -290 -290 -0.5131% -0.5131%
YEAST_KO_Astral 66823 87992 87947 88258 +21435 +266 +311 +32.0773% +0.3023% +0.3536%
EWZ_2P_MBR_Exploris 50700 56121 56121 55747 +5047 -374 -374 +9.9546% -0.6664% -0.6664%
EWZ_2P_noMBR_Exploris 50591 56321 56321 56302 +5711 -19 -19 +11.2886% -0.0337% -0.0337%

Metric: identification.protein_groups.total

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 603278 723191 726455 682966 +79688 -40225 -43489 +13.2092% -5.5622% -5.9865%
KEAP1KO_Eclipse 87920 92814 92814 92102 +4182 -712 -712 +4.7566% -0.7671% -0.7671%
MTAC_3P_Alternating 63773 64043 64043 63831 +58 -212 -212 +0.0909% -0.3310% -0.3310%
MTAC_3P_Standard 64317 64591 64591 64529 +212 -62 -62 +0.3296% -0.0960% -0.0960%
MTAC_Yeast_Alternating_3min 12100 12100 11992 -108 -108 -0.8926% -0.8926%
MTAC_Yeast_Alternating_5min 12432 12411 12413 12481 +49 +70 +68 +0.3941% +0.5640% +0.5478%
MTAC_Yeast_Standard_3min 12008 12020 12034 12050 +42 +30 +16 +0.3498% +0.2496% +0.1330%
MTAC_Yeast_Standard_5min 12561 12508 12508 12542 -19 +34 +34 -0.1513% +0.2718% +0.2718%
Olsen_Astral_3P 236395 245754 245754 243446 +7051 -2308 -2308 +2.9827% -0.9392% -0.9392%
Olsen_Exploris_3P 146224 153802 153802 154570 +8346 +768 +768 +5.7077% +0.4993% +0.4993%
SCIEX_3P 70810 74209 74209 73582 +2772 -627 -627 +3.9147% -0.8449% -0.8449%
SCP_Astral_1000pg_12ms 9163 9538 9538 9460 +297 -78 -78 +3.2413% -0.8178% -0.8178%
SCP_Astral_1000pg_24ms 9298 9857 9852 9516 +218 -341 -336 +2.3446% -3.4595% -3.4105%
SCP_Astral_1000pg_3ms 2450 6084 6084 6244 +3794 +160 +160 +154.8571% +2.6298% +2.6298%
SCP_Astral_1000pg_6ms 4703 4588 4588 4959 +256 +371 +371 +5.4433% +8.0863% +8.0863%
SCP_Astral_10ng_12ms 16190 16202 16202 16211 +21 +9 +9 +0.1297% +0.0555% +0.0555%
SCP_Astral_10ng_24ms 13599 13792 13697 13677 +78 -115 -20 +0.5736% -0.8338% -0.1460%
SCP_Astral_10ng_6ms 17017 17179 17127 17040 +23 -139 -87 +0.1352% -0.8091% -0.5080%
SCP_Astral_10ng_ms 16252 16276 16276 16166 -86 -110 -110 -0.5292% -0.6758% -0.6758%
SCP_Astral_250pg_12ms 3647 3913 3913 3853 +206 -60 -60 +5.6485% -1.5334% -1.5334%
SCP_Astral_250pg_24ms 4300 4603 4603 4720 +420 +117 +117 +9.7674% +2.5418% +2.5418%
SCP_Astral_250pg_3ms 576 22 22 1094 +518 +1072 +1072 +89.9306% +4872.7273% +4872.7273%
SCP_Astral_250pg_6ms 637 2080 2080 2162 +1525 +82 +82 +239.4035% +3.9423% +3.9423%
SCP_Astral_500pg_12ms 6245 6346 6346 5764 -481 -582 -582 -7.7022% -9.1711% -9.1711%
SCP_Astral_500pg_24ms 6722 6729 6729 7110 +388 +381 +381 +5.7721% +5.6621% +5.6621%
SCP_Astral_500pg_3ms 982 1887 +905 +92.1589%
SCP_Astral_500pg_6ms 3708 4007 4007 4024 +316 +17 +17 +8.5221% +0.4243% +0.4243%
SCP_Astral_MBR 20165 20214 20214 20088 -77 -126 -126 -0.3818% -0.6233% -0.6233%
Seer_Astral_45 225377 241502 241502 241611 +16234 +109 +109 +7.2030% +0.0451% +0.0451%
Seer_Astral_single 4662 4662 4731 +69 +69 +1.4801% +1.4801%
YEAST_KO_Astral 1300836 1388950 1386974 1347754 +46918 -41196 -39220 +3.6068% -2.9660% -2.8277%
EWZ_2P_MBR_Exploris 239484 245804 245804 246268 +6784 +464 +464 +2.8328% +0.1888% +0.1888%
EWZ_2P_noMBR_Exploris 235990 245406 245406 244323 +8333 -1083 -1083 +3.5311% -0.4413% -0.4413%

Metric: identification.protein_groups.unique

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 21740 28560 28358 26783 +5043 -1777 -1575 +23.1969% -6.2220% -5.5540%
KEAP1KO_Eclipse 7845 8174 8174 8170 +325 -4 -4 +4.1428% -0.0489% -0.0489%
MTAC_3P_Alternating 11361 11494 11494 11413 +52 -81 -81 +0.4577% -0.7047% -0.7047%
MTAC_3P_Standard 11473 11609 11609 11576 +103 -33 -33 +0.8978% -0.2843% -0.2843%
MTAC_Yeast_Alternating_3min 4135 4135 4111 -24 -24 -0.5804% -0.5804%
MTAC_Yeast_Alternating_5min 4215 4229 4232 4262 +47 +33 +30 +1.1151% +0.7803% +0.7089%
MTAC_Yeast_Standard_3min 4075 4100 4113 4128 +53 +28 +15 +1.3006% +0.6829% +0.3647%
MTAC_Yeast_Standard_5min 4249 4249 4249 4262 +13 +13 +13 +0.3060% +0.3060% +0.3060%
Olsen_Astral_3P 13820 14399 14399 14435 +615 +36 +36 +4.4501% +0.2500% +0.2500%
Olsen_Exploris_3P 7255 7623 7623 7514 +259 -109 -109 +3.5700% -1.4299% -1.4299%
SCIEX_3P 8652 9081 9081 8986 +334 -95 -95 +3.8604% -1.0461% -1.0461%
SCP_Astral_1000pg_12ms 3245 3397 3397 3352 +107 -45 -45 +3.2974% -1.3247% -1.3247%
SCP_Astral_1000pg_24ms 3254 3466 3469 3330 +76 -136 -139 +2.3356% -3.9238% -4.0069%
SCP_Astral_1000pg_3ms 2450 2396 2396 2463 +13 +67 +67 +0.5306% +2.7963% +2.7963%
SCP_Astral_1000pg_6ms 2508 2436 2436 2633 +125 +197 +197 +4.9841% +8.0870% +8.0870%
SCP_Astral_10ng_12ms 5579 5627 5627 5594 +15 -33 -33 +0.2689% -0.5865% -0.5865%
SCP_Astral_10ng_24ms 4721 4803 4754 4758 +37 -45 +4 +0.7837% -0.9369% +0.0841%
SCP_Astral_10ng_6ms 5846 5950 5930 5887 +41 -63 -43 +0.7013% -1.0588% -0.7251%
SCP_Astral_10ng_ms 5611 5655 5655 5641 +30 -14 -14 +0.5347% -0.2476% -0.2476%
SCP_Astral_250pg_12ms 1292 1424 1424 1405 +113 -19 -19 +8.7461% -1.3343% -1.3343%
SCP_Astral_250pg_24ms 1568 1660 1660 1738 +170 +78 +78 +10.8418% +4.6988% +4.6988%
SCP_Astral_250pg_3ms 307 8 8 402 +95 +394 +394 +30.9446% +4925% +4925%
SCP_Astral_250pg_6ms 637 756 756 790 +153 +34 +34 +24.0188% +4.4974% +4.4974%
SCP_Astral_500pg_12ms 2207 2275 2275 2080 -127 -195 -195 -5.7544% -8.5714% -8.5714%
SCP_Astral_500pg_24ms 2403 2388 2388 2511 +108 +123 +123 +4.4944% +5.1508% +5.1508%
SCP_Astral_500pg_3ms 525 692 +167 +31.8095%
SCP_Astral_500pg_6ms 1318 1447 1447 1467 +149 +20 +20 +11.3050% +1.3822% +1.3822%
SCP_Astral_MBR 4708 4754 4754 4704 -4 -50 -50 -0.0850% -1.0517% -1.0517%
Seer_Astral_45 5802 6299 6299 6264 +462 -35 -35 +7.9628% -0.5556% -0.5556%
Seer_Astral_single 4662 4662 4731 +69 +69 +1.4801% +1.4801%
YEAST_KO_Astral 4565 4793 4786 4742 +177 -51 -44 +3.8773% -1.0641% -0.9193%
EWZ_2P_MBR_Exploris 6831 7038 7038 7061 +230 +23 +23 +3.3670% +0.3268% +0.3268%
EWZ_2P_noMBR_Exploris 6858 7115 7115 7054 +196 -61 -61 +2.8580% -0.8573% -0.8573%

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0006 -0.0003 -0.0003 -0.0011 -0.0005 -0.0008 -0.0008
MTAC_3P_Alternating_Entrapment -0.0005 -0.0001 -0.0001 -0.0008 -0.0003 -0.0007 -0.0007
MTAC_3P_Standard_Entrapment -0.0014 0.0002 0.0002
MTAC_Yeast_Alternating_3min_Entrapment -0.0020 -0.0020
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0013 -0.0013 -0.0017 -0.0013 -0.0005 -0.0005
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0013 -0.0013 -0.0014 +0.0004 -0.0001 -0.0001
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0020 -0.0021 -0.0011 -0.0002
Olsen_Astral_3P_Entrapment -0.0015 -0.0011 -0.0018 -0.0003 -0.0007
Olsen_Exploris_3P_Entrapment -0.0002 0.0002 -0.0007 -0.0006 -0.0010
SCIEX_3P_Entrapment -0.0005 -0.0001 -0.0001 +0.0004 -0.0000
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0016 -0.0030 -0.0007 -0.0014
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0033 -0.0032 +0.0022 +0.0001
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0037 -0.0037 -0.0037 -0.0008 -0.0001 -0.0001
SCP_Astral_1000pg_6ms_Entrapment -0.0002 -0.0011 -0.0011 -0.0030 -0.0028 -0.0019 -0.0019
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0023 -0.0023 -0.0019 +0.0003 +0.0004 +0.0004
SCP_Astral_10ng_24ms_Entrapment -0.0020 0.0009 -0.0025 -0.0005 -0.0034
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0027 -0.0028 -0.0003 -0.0001
SCP_Astral_10ng_6ms_Entrapment -0.0008 -0.0003 -0.0005 +0.0003 -0.0002
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0040 -0.0015 +0.0024 +0.0025
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0012 -0.0009 -0.0007 +0.0003
SCP_Astral_250pg_6ms_Entrapment -0.0051 -0.0020 +0.0031
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0020 -0.0020 -0.0042 -0.0020 -0.0022 -0.0022
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0031 0.0001 +0.0014 +0.0032
SCP_Astral_500pg_3ms_Entrapment -0.0013 -0.0011 +0.0002
SCP_Astral_500pg_6ms_Entrapment -0.0031 -0.0031 -0.0022 +0.0009 +0.0009
SCP_Astral_MBR_Entrapment -0.0026 -0.0017 -0.0016 +0.0010 +0.0001
YEAST_KO_Astral_Entrapment -0.0024 -0.0025 -0.0025 -0.0020 +0.0004 +0.0005 +0.0005

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0010 -0.0031 -0.0031 -0.0026 -0.0016 +0.0006 +0.0006
MTAC_3P_Alternating_Entrapment -0.0010 -0.0006 -0.0006 -0.0008 +0.0002 -0.0002 -0.0002
MTAC_3P_Standard_Entrapment -0.0013 -0.0022 -0.0022
MTAC_Yeast_Alternating_3min_Entrapment -0.0050 -0.0050
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0038 -0.0038 -0.0058 -0.0017 -0.0020 -0.0020
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0050 -0.0050 -0.0042 +0.0016 +0.0007 +0.0007
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0045 -0.0038 -0.0002 +0.0007
Olsen_Astral_3P_Entrapment -0.0041 -0.0034 -0.0033 +0.0007 +0.0001
Olsen_Exploris_3P_Entrapment -0.0029 0.0002 -0.0032 -0.0003 -0.0035
SCIEX_3P_Entrapment -0.0031 -0.0032 -0.0042 -0.0010 -0.0009
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0046 -0.0030 +0.0019 +0.0016
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0058 -0.0061 +0.0009 -0.0002
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0036 -0.0036 -0.0082 -0.0023 -0.0046 -0.0046
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0049 -0.0049 -0.0071 -0.0053 -0.0021 -0.0021
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0049 -0.0049 -0.0029 +0.0026 +0.0021 +0.0021
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0023 -0.0043 -0.0011 -0.0020
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0073 -0.0065 -0.0029 +0.0008
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0023 -0.0033 +0.0022 -0.0009
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0076 -0.0053 -0.0000 +0.0023
SCP_Astral_250pg_24ms_Entrapment -0.0042 -0.0042 -0.0001 +0.0040 +0.0041
SCP_Astral_250pg_3ms_Entrapment -0.0028 0 0 -0.0081 -0.0053 -0.0081 -0.0081
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0067 -0.0067 -0.0068 +0.0031 -0.0002 -0.0002
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0054 -0.0054 -0.0011 +0.0025 +0.0043 +0.0043
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0008 -0.0052 -0.0032 -0.0043
SCP_Astral_500pg_3ms_Entrapment -0.0042 0.0071 0.0040 +0.0082 -0.0031
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0045 -0.0045 0.0012 +0.0057 +0.0057 +0.0057
SCP_Astral_MBR_Entrapment -0.0059 -0.0019 -0.0036 +0.0023 -0.0018
YEAST_KO_Astral_Entrapment -0.0065 -0.0049 -0.0049 -0.0040 +0.0025 +0.0008 +0.0008

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0005 -0.0004 -0.0004 -0.0009 -0.0004 -0.0005 -0.0005
MTAC_3P_Alternating_Entrapment -0.0001 0.0003 0.0003 -0.0001 +0.0001 -0.0003 -0.0003
MTAC_3P_Standard_Entrapment -0.0009 0.0001 0.0001
MTAC_Yeast_Alternating_3min_Entrapment -0.0013 -0.0013
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0008 -0.0008 -0.0010 -0.0006 -0.0002 -0.0002
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0007 -0.0007 -0.0007 +0.0002 +0.0000 +0.0000
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0010 -0.0011 -0.0003 -0.0001
Olsen_Astral_3P_Entrapment -0.0008 -0.0004 -0.0008 +0.0000 -0.0004
Olsen_Exploris_3P_Entrapment -0.0004 0.0005 -0.0002 +0.0003 -0.0006
SCIEX_3P_Entrapment -0.0005 -0.0001 -0.0001 +0.0004 +0.0000
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0013 -0.0021 -0.0006 -0.0008
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0028 -0.0031 +0.0014 -0.0003
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0022 -0.0022 -0.0031 -0.0011 -0.0009 -0.0009
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0006 -0.0006 -0.0026 -0.0028 -0.0021 -0.0021
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0012 -0.0012 -0.0011 +0.0006 +0.0002 +0.0002
SCP_Astral_10ng_24ms_Entrapment -0.0014 0.0004 -0.0019 -0.0006 -0.0023
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0020 -0.0023 -0.0003 -0.0003
SCP_Astral_10ng_6ms_Entrapment -0.0005 0.0002 -0.0004 +0.0001 -0.0006
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0027 -0.0013 +0.0017 +0.0014
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0008 -0.0001 +0.0006 +0.0007
SCP_Astral_250pg_6ms_Entrapment -0.0037 -0.0032 +0.0005
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0012 -0.0012 -0.0028 -0.0009 -0.0016 -0.0016
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0021 -0.0008 +0.0007 +0.0012
SCP_Astral_500pg_3ms_Entrapment 0.0019 0.0005 -0.0013
SCP_Astral_500pg_6ms_Entrapment -0.0025 -0.0025 -0.0006 +0.0019 +0.0019
SCP_Astral_MBR_Entrapment -0.0017 -0.0015 -0.0011 +0.0006 +0.0003
YEAST_KO_Astral_Entrapment -0.0013 -0.0006 -0.0006 -0.0004 +0.0009 +0.0002 +0.0002

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0002 -0.0019 -0.0019 -0.0009 -0.0007 +0.0010 +0.0010
MTAC_3P_Alternating_Entrapment -0.0001 0.0001 0.0001 -0.0002 -0.0000 -0.0003 -0.0003
MTAC_3P_Standard_Entrapment -0.0008 -0.0012 -0.0012
MTAC_Yeast_Alternating_3min_Entrapment -0.0030 -0.0030
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0021 -0.0021 -0.0032 +0.0005 -0.0011 -0.0011
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0032 -0.0032 -0.0026 +0.0012 +0.0006 +0.0006
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0027 -0.0026 -0.0003 +0.0001
Olsen_Astral_3P_Entrapment -0.0024 -0.0024 -0.0025 -0.0001 -0.0002
Olsen_Exploris_3P_Entrapment -0.0026 0.0005 -0.0023 +0.0004 -0.0028
SCIEX_3P_Entrapment -0.0036 -0.0031 -0.0035 +0.0001 -0.0003
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0032 -0.0026 +0.0012 +0.0007
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0056 -0.0053 -0.0005 +0.0002
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0016 -0.0016 -0.0045 -0.0001 -0.0029 -0.0029
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0035 -0.0035 -0.0051 -0.0026 -0.0016 -0.0016
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0032 -0.0032 -0.0030 +0.0017 +0.0002 +0.0002
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0014 -0.0028 +0.0004 -0.0014
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0046 -0.0037 -0.0015 +0.0009
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0030 -0.0030 +0.0009 -0.0000
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0041 -0.0033 +0.0005 +0.0008
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0032 0.0021 +0.0034 +0.0053
SCP_Astral_250pg_3ms_Entrapment -0.0060 -0.0082 -0.0082 -0.0088 -0.0028 -0.0007 -0.0007
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0068 -0.0068 -0.0042 +0.0058 +0.0026 +0.0026
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0040 -0.0040 -0.0025 +0.0015 +0.0015 +0.0015
SCP_Astral_500pg_24ms_Entrapment -0.0019 -0.0001 -0.0038 -0.0018 -0.0037
SCP_Astral_500pg_3ms_Entrapment -0.0032 0.0066 0.0054 +0.0086 -0.0013
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0022 -0.0022 0.0004 +0.0024 +0.0026 +0.0026
SCP_Astral_MBR_Entrapment -0.0024 -0.0015 -0.0024 -0.0001 -0.0009
YEAST_KO_Astral_Entrapment -0.0041 -0.0029 -0.0029 -0.0025 +0.0016 +0.0004 +0.0004

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131 0.0067 0.0067 0.0064 -0.0067 -0.0003 -0.0003

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476 0.4086 0.4086 0.0788 +0.0312 -0.3299 -0.3299

keap1.precursors

Dataset Gene Run v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1 1 0 +1 +0 -1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1 1 1 +1 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 13 13 14 +4 +0 +1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 13 13 13 +4 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 13 13 14 +3 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1 1 2 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1 1 2 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1 1 2 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 1 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 1 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 +0 +0 +0

keap1.protein_groups

Dataset Gene Run v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1 1 1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1 1 1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1 1 1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0 0 1 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0 0 1 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 +0 +0 +0

Metric: cv.precursors.median_cv

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1423 0.1423 0.1397 -0.0062 -0.0026 -0.0026
MTAC_3P_Standard 0.1393 0.1363 0.1363 0.1346 -0.0047 -0.0017 -0.0017
MTAC_Yeast_Alternating_3min 0.1456 0.1456 0.1422 -0.0034 -0.0034
MTAC_Yeast_Alternating_5min 0.1531 0.1402 0.1404 0.1375 -0.0155 -0.0027 -0.0029
MTAC_Yeast_Standard_3min 0.1698 0.1644 0.1641 0.1617 -0.0081 -0.0027 -0.0024
MTAC_Yeast_Standard_5min 0.1503 0.1369 0.1369 0.1335 -0.0168 -0.0033 -0.0033
Olsen_Astral_3P 0.0823 0.0884 0.0884 0.0847 +0.0024 -0.0037 -0.0037
Olsen_Exploris_3P 0.1480 0.1500 0.1500 0.1498 +0.0018 -0.0001 -0.0001
SCIEX_3P 0.1284 0.1281 0.1281 0.1208 -0.0076 -0.0073 -0.0073

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0738 0.0738 0.0725 -0.0038 -0.0013 -0.0013
MTAC_3P_Standard 0.0723 0.0704 0.0704 0.0700 -0.0023 -0.0004 -0.0004
MTAC_Yeast_Alternating_3min 0.0670 0.0670 0.0661 -0.0009 -0.0009
MTAC_Yeast_Alternating_5min 0.0778 0.0596 0.0598 0.0595 -0.0183 -0.0001 -0.0003
MTAC_Yeast_Standard_3min 0.0792 0.0772 0.0772 0.0754 -0.0038 -0.0018 -0.0018
MTAC_Yeast_Standard_5min 0.0770 0.0567 0.0567 0.0580 -0.0190 +0.0014 +0.0014
Olsen_Astral_3P 0.0374 0.0373 0.0373 0.0366 -0.0008 -0.0007 -0.0007
Olsen_Exploris_3P 0.1028 0.1020 0.1020 0.1028 -0.0000 +0.0008 +0.0008
SCIEX_3P 0.0864 0.0834 0.0834 0.0794 -0.0070 -0.0040 -0.0040

fold_change.error.precursors

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0690 -0.0690 -0.0800 -0.0024 +0 +0.0111
MTAC_3P_Alternating human A vs B -0.0432 -0.0352 -0.0352 -0.0410 -0.0079 +0 +0.0058
MTAC_3P_Alternating yeast A vs B -0.0026 0.0043 0.0043 0.0032 +0.0017 +0 -0.0011
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1260 -0.1260 -0.1282 +0.0015 +0 +0.0022
MTAC_3P_Standard human A vs B -0.0785 -0.0730 -0.0730 -0.0731 -0.0055 +0 +0.0001
MTAC_3P_Standard yeast A vs B -0.0337 -0.0254 -0.0254 -0.0275 -0.0083 +0 +0.0021
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0684 -0.0684 -0.0991 +0.0114 +0 +0.0306
Olsen_Astral_3P ecoli D vs C -0.2013 -0.2131 -0.2131 -0.2335 +0.0117 +0 +0.0205
Olsen_Astral_3P ecoli F vs E 0.0193 -0.0124 -0.0124 -0.0156 -0.0069 +0 +0.0032
Olsen_Astral_3P human B vs A -0.0036 -0.0104 -0.0104 -0.0411 +0.0067 +0 +0.0308
Olsen_Astral_3P human D vs C -0.3258 -0.3340 -0.3340 -0.3428 +0.0083 +0 +0.0088
Olsen_Astral_3P human F vs E 0.0777 0.0752 0.0752 0.0348 -0.0025 +0 -0.0404
Olsen_Astral_3P yeast B vs A 0.0756 0.0863 0.0863 0.0737 +0.0108 +0 -0.0126
Olsen_Astral_3P yeast D vs C -0.2263 -0.2274 -0.2274 -0.2291 +0.0011 +0 +0.0017
Olsen_Astral_3P yeast F vs E 0.1940 0.2202 0.2202 0.2049 +0.0262 +0 -0.0153
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2234 0.2234 0.2294 -0.0038 +0 +0.0060
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0755 -0.0755 -0.0746 +0.0068 +0 -0.0009
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2741 0.2741 0.2742 +0.0186 +0 +0.0001
Olsen_Exploris_3P human B vs A 0.0955 0.1004 0.1004 0.0972 +0.0049 +0 -0.0031
Olsen_Exploris_3P human D vs C -0.0535 -0.0539 -0.0539 -0.0537 +0.0004 +0 -0.0002
Olsen_Exploris_3P human F vs E 0.1998 0.2053 0.2053 0.2037 +0.0054 +0 -0.0016
Olsen_Exploris_3P yeast B vs A 0.0478 0.0464 0.0464 0.0332 -0.0014 +0 -0.0132
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1118 -0.1118 -0.1140 +0.0042 +0 +0.0022
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0906 -0.0906 -0.0926 +0.0227 +0 +0.0020
SCIEX_3P ecoli B vs A -0.0531 -0.0718 -0.0718 -0.0854 +0.0187 +0 +0.0136
SCIEX_3P ecoli C vs A -0.0580 -0.0539 -0.0539 -0.0743 -0.0042 +0 +0.0205
SCIEX_3P ecoli C vs B -0.0146 0.0095 0.0095 0.0010 -0.0050 +0 -0.0085
SCIEX_3P human B vs A -0.0334 -0.0452 -0.0452 -0.0429 +0.0117 +0 -0.0022
SCIEX_3P human C vs A -0.0804 -0.0564 -0.0564 -0.0610 -0.0241 +0 +0.0046
SCIEX_3P human C vs B -0.0484 -0.0152 -0.0152 -0.0220 -0.0332 +0 +0.0068
SCIEX_3P yeast B vs A -0.0084 -0.0194 -0.0194 -0.0040 +0.0110 +0 -0.0154
SCIEX_3P yeast C vs A -0.1064 -0.0712 -0.0712 -0.0451 -0.0352 +0 -0.0260
SCIEX_3P yeast C vs B -0.0912 -0.0433 -0.0433 -0.0277 -0.0479 +0 -0.0156

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0665 -0.0665 -0.0769 +0.0011 +0 +0.0105
MTAC_3P_Alternating human A vs B -0.0451 -0.0368 -0.0368 -0.0409 -0.0083 +0 +0.0041
MTAC_3P_Alternating yeast A vs B 0.0016 0.0064 0.0064 -0.0002 +0.0048 +0 -0.0063
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1245 -0.1245 -0.1277 +0.0000 +0 +0.0032
MTAC_3P_Standard human A vs B -0.0772 -0.0708 -0.0708 -0.0696 -0.0064 +0 -0.0012
MTAC_3P_Standard yeast A vs B -0.0322 -0.0248 -0.0248 -0.0251 -0.0075 +0 +0.0003
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0651 -0.0651 -0.0867 +0.0198 +0 +0.0216
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1660 -0.1660 -0.1724 +0.0046 +0 +0.0065
Olsen_Astral_3P ecoli F vs E 0.0601 0.0256 0.0256 0.0239 -0.0344 +0 -0.0018
Olsen_Astral_3P human B vs A -0.0149 -0.0219 -0.0219 -0.0510 +0.0070 +0 +0.0291
Olsen_Astral_3P human D vs C -0.2928 -0.3003 -0.3003 -0.3061 +0.0075 +0 +0.0058
Olsen_Astral_3P human F vs E 0.0700 0.0700 0.0700 0.0306 -0.0001 +0 -0.0394
Olsen_Astral_3P yeast B vs A 0.0543 0.0660 0.0660 0.0544 +0.0118 +0 -0.0116
Olsen_Astral_3P yeast D vs C -0.1994 -0.1997 -0.1997 -0.1978 +0.0003 +0 -0.0019
Olsen_Astral_3P yeast F vs E 0.1690 0.1963 0.1963 0.1800 +0.0273 +0 -0.0162
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2133 0.2133 0.2082 -0.0039 +0 -0.0051
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0743 -0.0743 -0.0704 +0.0080 +0 -0.0040
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3042 0.3042 0.2891 +0.0484 +0 -0.0152
Olsen_Exploris_3P human B vs A 0.0841 0.0878 0.0878 0.0840 +0.0037 +0 -0.0038
Olsen_Exploris_3P human D vs C -0.0502 -0.0508 -0.0508 -0.0510 +0.0006 +0 +0.0002
Olsen_Exploris_3P human F vs E 0.1988 0.2026 0.2026 0.2043 +0.0038 +0 +0.0017
Olsen_Exploris_3P yeast B vs A 0.0433 0.0386 0.0386 0.0294 -0.0047 +0 -0.0092
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1163 -0.1163 -0.1150 +0.0068 +0 -0.0013
Olsen_Exploris_3P yeast F vs E -0.0534 -0.1043 -0.1043 -0.1051 +0.0509 +0 +0.0008
SCIEX_3P ecoli B vs A -0.0415 -0.0613 -0.0613 -0.0799 +0.0198 +0 +0.0186
SCIEX_3P ecoli C vs A -0.0531 -0.0459 -0.0459 -0.0716 -0.0072 +0 +0.0257
SCIEX_3P ecoli C vs B -0.0149 0.0153 0.0153 0.0030 +0.0003 +0 -0.0123
SCIEX_3P human B vs A -0.0318 -0.0450 -0.0450 -0.0404 +0.0132 +0 -0.0046
SCIEX_3P human C vs A -0.0819 -0.0580 -0.0580 -0.0618 -0.0239 +0 +0.0038
SCIEX_3P human C vs B -0.0489 -0.0140 -0.0140 -0.0215 -0.0349 +0 +0.0076
SCIEX_3P yeast B vs A -0.0091 -0.0233 -0.0233 -0.0070 +0.0141 +0 -0.0163
SCIEX_3P yeast C vs A -0.1151 -0.0731 -0.0731 -0.0449 -0.0420 +0 -0.0283
SCIEX_3P yeast C vs B -0.1020 -0.0500 -0.0500 -0.0294 -0.0520 +0 -0.0206

fold_change.variance.precursors

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.2986 0.2986 0.3191 +0.0367 +0 +0.0205
MTAC_3P_Alternating human A vs B 0.1984 0.2126 0.2126 0.2206 +0.0142 +0 +0.0080
MTAC_3P_Alternating yeast A vs B 0.2558 0.2707 0.2707 0.2655 +0.0148 +0 -0.0051
MTAC_3P_Standard ecoli A vs B 0.2681 0.3085 0.3085 0.3050 +0.0404 +0 -0.0035
MTAC_3P_Standard human A vs B 0.2062 0.2230 0.2230 0.2281 +0.0168 +0 +0.0051
MTAC_3P_Standard yeast A vs B 0.2555 0.2741 0.2741 0.2819 +0.0186 +0 +0.0078
Olsen_Astral_3P ecoli B vs A 0.5438 0.5988 0.5988 0.5889 +0.0550 +0 -0.0099
Olsen_Astral_3P ecoli D vs C 0.3566 0.3951 0.3951 0.3662 +0.0384 +0 -0.0288
Olsen_Astral_3P ecoli F vs E 1.1682 1.3605 1.3605 1.1915 +0.1923 +0 -0.1690
Olsen_Astral_3P human B vs A 0.2100 0.2539 0.2539 0.2634 +0.0439 +0 +0.0095
Olsen_Astral_3P human D vs C 0.2930 0.3416 0.3416 0.3381 +0.0486 +0 -0.0035
Olsen_Astral_3P human F vs E 0.3046 0.3584 0.3584 0.3816 +0.0538 +0 +0.0232
Olsen_Astral_3P yeast B vs A 0.2937 0.3308 0.3308 0.3319 +0.0371 +0 +0.0011
Olsen_Astral_3P yeast D vs C 0.2553 0.2849 0.2849 0.2889 +0.0296 +0 +0.0040
Olsen_Astral_3P yeast F vs E 0.4774 0.5563 0.5563 0.5352 +0.0788 +0 -0.0211
Olsen_Exploris_3P ecoli B vs A 0.5783 0.6122 0.6122 0.5997 +0.0339 +0 -0.0126
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1567 0.1567 0.1522 -0.0061 +0 -0.0045
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8085 0.8085 0.8561 +0.0041 +0 +0.0477
Olsen_Exploris_3P human B vs A 0.3372 0.3388 0.3388 0.3400 +0.0015 +0 +0.0013
Olsen_Exploris_3P human D vs C 0.1096 0.1750 0.1750 0.1588 +0.0655 +0 -0.0162
Olsen_Exploris_3P human F vs E 0.3024 0.3305 0.3305 0.3397 +0.0280 +0 +0.0092
Olsen_Exploris_3P yeast B vs A 0.6189 0.5961 0.5961 0.6189 -0.0228 +0 +0.0228
Olsen_Exploris_3P yeast D vs C 0.1498 0.2462 0.2462 0.2181 +0.0964 +0 -0.0280
Olsen_Exploris_3P yeast F vs E 1.0859 1.1525 1.1525 1.2070 +0.0666 +0 +0.0544
SCIEX_3P ecoli B vs A 0.5007 0.5347 0.5347 0.4980 +0.0340 +0 -0.0367
SCIEX_3P ecoli C vs A 0.5855 0.5991 0.5991 0.5818 +0.0136 +0 -0.0174
SCIEX_3P ecoli C vs B 0.1466 0.1463 0.1463 0.1142 -0.0003 +0 -0.0321
SCIEX_3P human B vs A 0.1942 0.2132 0.2132 0.1652 +0.0190 +0 -0.0480
SCIEX_3P human C vs A 0.2171 0.2455 0.2455 0.1958 +0.0284 +0 -0.0497
SCIEX_3P human C vs B 0.1705 0.1985 0.1985 0.1421 +0.0280 +0 -0.0564
SCIEX_3P yeast B vs A 0.2341 0.2465 0.2465 0.1903 +0.0124 +0 -0.0562
SCIEX_3P yeast C vs A 0.5719 0.6150 0.6150 0.6347 +0.0431 +0 +0.0197
SCIEX_3P yeast C vs B 0.4881 0.5513 0.5513 0.5588 +0.0632 +0 +0.0075

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1525 0.1525 0.1359 +0.0230 +0 -0.0166
MTAC_3P_Alternating human A vs B 0.0731 0.0757 0.0757 0.0766 +0.0026 +0 +0.0009
MTAC_3P_Alternating yeast A vs B 0.1300 0.1123 0.1123 0.1063 -0.0177 +0 -0.0059
MTAC_3P_Standard ecoli A vs B 0.1320 0.1244 0.1244 0.1083 -0.0076 +0 -0.0161
MTAC_3P_Standard human A vs B 0.0679 0.0706 0.0706 0.0740 +0.0026 +0 +0.0035
MTAC_3P_Standard yeast A vs B 0.1262 0.1294 0.1294 0.1388 +0.0033 +0 +0.0094
Olsen_Astral_3P ecoli B vs A 0.1924 0.2322 0.2322 0.1653 +0.0399 +0 -0.0669
Olsen_Astral_3P ecoli D vs C 0.1089 0.1342 0.1342 0.1191 +0.0252 +0 -0.0150
Olsen_Astral_3P ecoli F vs E 0.3405 0.4293 0.4293 0.3446 +0.0889 +0 -0.0847
Olsen_Astral_3P human B vs A 0.0420 0.0445 0.0445 0.0459 +0.0025 +0 +0.0014
Olsen_Astral_3P human D vs C 0.0549 0.0649 0.0649 0.0622 +0.0100 +0 -0.0028
Olsen_Astral_3P human F vs E 0.0528 0.0597 0.0597 0.0584 +0.0069 +0 -0.0013
Olsen_Astral_3P yeast B vs A 0.0563 0.0533 0.0533 0.0611 -0.0030 +0 +0.0078
Olsen_Astral_3P yeast D vs C 0.0483 0.0505 0.0505 0.0492 +0.0023 +0 -0.0013
Olsen_Astral_3P yeast F vs E 0.0959 0.1287 0.1287 0.1117 +0.0328 +0 -0.0170
Olsen_Exploris_3P ecoli B vs A 0.2033 0.2490 0.2490 0.2986 +0.0457 +0 +0.0496
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0575 0.0575 0.0516 -0.0061 +0 -0.0059
Olsen_Exploris_3P ecoli F vs E 0.4584 0.4220 0.4220 0.4299 -0.0364 +0 +0.0079
Olsen_Exploris_3P human B vs A 0.0646 0.0587 0.0587 0.0628 -0.0059 +0 +0.0041
Olsen_Exploris_3P human D vs C 0.0301 0.0346 0.0346 0.0347 +0.0045 +0 +0.0001
Olsen_Exploris_3P human F vs E 0.0759 0.0741 0.0741 0.0768 -0.0018 +0 +0.0027
Olsen_Exploris_3P yeast B vs A 0.2336 0.2060 0.2060 0.2172 -0.0276 +0 +0.0112
Olsen_Exploris_3P yeast D vs C 0.0715 0.0758 0.0758 0.0611 +0.0043 +0 -0.0147
Olsen_Exploris_3P yeast F vs E 0.5309 0.4212 0.4212 0.3974 -0.1098 +0 -0.0238
SCIEX_3P ecoli B vs A 0.2191 0.3229 0.3229 0.2395 +0.1039 +0 -0.0834
SCIEX_3P ecoli C vs A 0.2647 0.3082 0.3082 0.2665 +0.0434 +0 -0.0417
SCIEX_3P ecoli C vs B 0.0574 0.0650 0.0650 0.0455 +0.0076 +0 -0.0195
SCIEX_3P human B vs A 0.0657 0.0604 0.0604 0.0498 -0.0052 +0 -0.0107
SCIEX_3P human C vs A 0.0731 0.0655 0.0655 0.0558 -0.0076 +0 -0.0097
SCIEX_3P human C vs B 0.0556 0.0615 0.0615 0.0448 +0.0059 +0 -0.0167
SCIEX_3P yeast B vs A 0.1098 0.0968 0.0968 0.0946 -0.0129 +0 -0.0022
SCIEX_3P yeast C vs A 0.2938 0.3167 0.3167 0.2900 +0.0229 +0 -0.0267
SCIEX_3P yeast C vs B 0.2531 0.2947 0.2947 0.2733 +0.0416 +0 -0.0214

Metric: runtime

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 247.2300 244.2700 247.1600 402.5600 +155.3300 +158.2900 +155.4000 +62.8281% +64.8012% +62.8743%
KEAP1KO_Eclipse 24.0700 22.8000 19.6500 24.5700 +0.5000 +1.7700 +4.9200 +2.0773% +7.7632% +25.0382%
MTAC_3P_Alternating 12.7500 13.6800 8.5700 11.7100 -1.0400 -1.9700 +3.1400 -8.1569% -14.4006% +36.6394%
MTAC_3P_Standard 12.3100 13.0600 10.2700 10.7800 -1.5300 -2.2800 +0.5100 -12.4289% -17.4579% +4.9659%
MTAC_Yeast_Alternating_3min 5.4900 4.0600 4.9000 -0.5900 +0.8400 -10.7468% +20.6897%
MTAC_Yeast_Alternating_5min 5.3800 4.7200 4.1500 4.9400 -0.4400 +0.2200 +0.7900 -8.1784% +4.6610% +19.0361%
MTAC_Yeast_Standard_3min 5.4300 5.6500 4.0200 4.6200 -0.8100 -1.0300 +0.6000 -14.9171% -18.2301% +14.9254%
MTAC_Yeast_Standard_5min 5.5500 4.3000 4.2900 4.4600 -1.0900 +0.1600 +0.1700 -19.6396% +3.7209% +3.9627%
Olsen_Astral_3P 76.4000 66.2000 62.2200 87.1700 +10.7700 +20.9700 +24.9500 +14.0969% +31.6767% +40.0996%
Olsen_Exploris_3P 27.6600 23.7200 20.3200 19.7100 -7.9500 -4.0100 -0.6100 -28.7419% -16.9056% -3.0020%
SCIEX_3P 30.2900 33.2900 28.0700 28.4200 -1.8700 -4.8700 +0.3500 -6.1737% -14.6290% +1.2469%
SCP_Astral_1000pg_12ms 5.7900 5.9000
SCP_Astral_1000pg_24ms 6.2600 5.2000 4.4400
SCP_Astral_1000pg_3ms 4.5200 6.1100 3.7600 4.2300 -0.2900 -1.8800 +0.4700 -6.4159% -30.7692% +12.5000%
SCP_Astral_1000pg_6ms 5.7400 3.5300 3.5300 3.5200 -2.2200 -0.0100 -0.0100 -38.6760% -0.2833% -0.2833%
SCP_Astral_10ng_12ms 7.0700 5.6300 5.4400 5.8200 -1.2500 +0.1900 +0.3800 -17.6803% +3.3748% +6.9853%
SCP_Astral_10ng_24ms 7.5900 8.3600 5.9200 5.9200 -1.6700 -2.4400 +0 -22.0026% -29.1866% +0%
SCP_Astral_10ng_6ms 7.3800 4.8900 4.7900 4.8900 -2.4900 +0 +0.1000 -33.7398% +0% +2.0877%
SCP_Astral_10ng_ms 6.4500 5.1900 4.6600 4.9700 -1.4800 -0.2200 +0.3100 -22.9457% -4.2389% +6.6524%
SCP_Astral_250pg_12ms 4.7400 3.5100 3.4700
SCP_Astral_250pg_24ms 5.2600 4.1900 3.6100 3.9500 -1.3100 -0.2400 +0.3400 -24.9049% -5.7279% +9.4183%
SCP_Astral_250pg_3ms 4.6500 3.8300 3.4600 4.3100 -0.3400 +0.4800 +0.8500 -7.3118% +12.5326% +24.5665%
SCP_Astral_250pg_6ms 4.1700 3.3900 3.2700 6.4600 +2.2900 +3.0700 +3.1900 +54.9161% +90.5605% +97.5535%
SCP_Astral_500pg_12ms 5.2800 3.4900 3.5400
SCP_Astral_500pg_24ms 5.5100 3.8200
SCP_Astral_500pg_3ms 4.7300 7.0100 +2.2800 +48.2030%
SCP_Astral_500pg_6ms 4.6500 3.4300 3.5100 4.2500 -0.4000 +0.8200 +0.7400 -8.6022% +23.9067% +21.0826%
SCP_Astral_MBR 9.0400
Seer_Astral_45 100.3500 67.8100 66.2700 65.8200 -34.5300 -1.9900 -0.4500 -34.4096% -2.9347% -0.6790%
Seer_Astral_single 4.3100 5.7400 4.9500 +0.6400 -0.7900 +14.8492% -13.7631%
YEAST_KO_Astral 235.6300 216.9300 213.3300 329.8800 +94.2500 +112.9500 +116.5500 +39.9992% +52.0675% +54.6337%
EWZ_2P_MBR_Exploris 29 29.1900 24.7500 26.1900 -2.8100 -3 +1.4400 -9.6897% -10.2775% +5.8182%
EWZ_2P_noMBR_Exploris 27.1100 28.3100 22.0700 24.2900 -2.8200 -4.0200 +2.2200 -10.4021% -14.1999% +10.0589%

EWZ_2P_MBR_Exploris_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_3P_Alternating_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Alternating_5min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Standard_3min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Standard_5min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

Olsen_Astral_3P_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

Olsen_Exploris_3P_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCIEX_3P_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_3ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_3ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_3ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_MBR_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

YEAST_KO_Astral_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png