Regression Metrics Report

Versions: v0.6.4, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 5499336 8338453
KEAP1KO_Eclipse 1096494 1266211
MTAC_3P_Alternating 586322 617230
MTAC_3P_Standard 596590 624975
MTAC_Yeast_Alternating_3min 137621 137143 -478 -0.3473%
MTAC_Yeast_Alternating_5min 155641 156513 156905 +1264 +392 +0.8121% +0.2505%
MTAC_Yeast_Standard_3min 138509 139769 139536 +1027 -233 +0.7415% -0.1667%
MTAC_Yeast_Standard_5min 158962 159012 158983 +21 -29 +0.0132% -0.0182%
Olsen_Astral_3P 3282083 3758538
Olsen_Exploris_3P 1022736 1168290
SCIEX_3P 672242 745684
SCP_Astral_1000pg_12ms 40882 42291 41855 +973 -436 +2.3800% -1.0310%
SCP_Astral_1000pg_24ms 41069 42909 42339 +1270 -570 +3.0924% -1.3284%
SCP_Astral_1000pg_3ms 8740 23167 23115 +14375 -52 +164.4737% -0.2245%
SCP_Astral_1000pg_6ms 16935 17612 17553 +618 -59 +3.6492% -0.3350%
SCP_Astral_10ng_12ms 99908 103367 102934 +3026 -433 +3.0288% -0.4189%
SCP_Astral_10ng_24ms 71098 72640 72805 +1707 +165 +2.4009% +0.2271%
SCP_Astral_10ng_6ms 115157 117666 117294 +2137 -372 +1.8557% -0.3161%
SCP_Astral_10ng_ms 105704 105740 106497 +793 +757 +0.7502% +0.7159%
SCP_Astral_250pg_12ms 10194 10638 10806 +612 +168 +6.0035% +1.5792%
SCP_Astral_250pg_24ms 14807 15433 15433 +626 +0 +4.2277% +0%
SCP_Astral_250pg_3ms 1261 2032 +771 +61.1420%
SCP_Astral_250pg_6ms 1436 4800 4783 +3347 -17 +233.0780% -0.3542%
SCP_Astral_500pg_12ms 21710 21916 21895 +185 -21 +0.8521% -0.0958%
SCP_Astral_500pg_24ms 25860 26194 26143 +283 -51 +1.0944% -0.1947%
SCP_Astral_500pg_3ms 3484 5754
SCP_Astral_500pg_6ms 10699 11408 11474 +775 +66 +7.2437% +0.5785%
SCP_Astral_MBR 92167 94498
Seer_Astral_45 2512737 3143498
Seer_Astral_single 56384 56522 +138 +0.2448%
YEAST_KO_Astral 16088274 20553710
EWZ_2P_MBR_Exploris 1662994 1810796
EWZ_2P_noMBR_Exploris 1608906 1774314

Metric: identification.precursors.unique

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 246168 440308
KEAP1KO_Eclipse 111504 127314
MTAC_3P_Alternating 108267 117978
MTAC_3P_Standard 110265 119192
MTAC_Yeast_Alternating_3min 48840 48709 -131 -0.2682%
MTAC_Yeast_Alternating_5min 53969 55176 55524 +1555 +348 +2.8813% +0.6307%
MTAC_Yeast_Standard_3min 48621 49985 49889 +1268 -96 +2.6079% -0.1921%
MTAC_Yeast_Standard_5min 55060 56016 56122 +1062 +106 +1.9288% +0.1892%
Olsen_Astral_3P 198770 231191
Olsen_Exploris_3P 51272 58723
SCIEX_3P 82206 93491
SCP_Astral_1000pg_12ms 14440 15018 15016 +576 -2 +3.9889% -0.0133%
SCP_Astral_1000pg_24ms 14483 15141 15025 +542 -116 +3.7423% -0.7661%
SCP_Astral_1000pg_3ms 8740 9394 9376 +636 -18 +7.2769% -0.1916%
SCP_Astral_1000pg_6ms 8898 9259 9259 +361 +0 +4.0571% +0%
SCP_Astral_10ng_12ms 34865 36385 36293 +1428 -92 +4.0958% -0.2529%
SCP_Astral_10ng_24ms 24649 25341 25531 +882 +190 +3.5782% +0.7498%
SCP_Astral_10ng_6ms 40156 41599 41523 +1367 -76 +3.4042% -0.1827%
SCP_Astral_10ng_ms 36688 37469 37676 +988 +207 +2.6930% +0.5525%
SCP_Astral_250pg_12ms 3666 3897 3949 +283 +52 +7.7196% +1.3344%
SCP_Astral_250pg_24ms 5299 5558 5611 +312 +53 +5.8879% +0.9536%
SCP_Astral_250pg_3ms 675 721 +46 +6.8148%
SCP_Astral_250pg_6ms 1436 1742 1738 +302 -4 +21.0306% -0.2296%
SCP_Astral_500pg_12ms 7794 7947 7972 +178 +25 +2.2838% +0.3146%
SCP_Astral_500pg_24ms 9158 9305 9342 +184 +37 +2.0092% +0.3976%
SCP_Astral_500pg_3ms 1846 2091
SCP_Astral_500pg_6ms 3874 4136 4155 +281 +19 +7.2535% +0.4594%
SCP_Astral_MBR 24110 24952
Seer_Astral_45 69584 89483
Seer_Astral_single 56384 56522 +138 +0.2448%
YEAST_KO_Astral 66823 87737
EWZ_2P_MBR_Exploris 50700 56084
EWZ_2P_noMBR_Exploris 50591 56348

Metric: identification.protein_groups.total

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 603278 767892
KEAP1KO_Eclipse 87920 93416
MTAC_3P_Alternating 63773 63963
MTAC_3P_Standard 64317 64677
MTAC_Yeast_Alternating_3min 12079 12100 +21 +0.1739%
MTAC_Yeast_Alternating_5min 12432 12455 12447 +15 -8 +0.1207% -0.0642%
MTAC_Yeast_Standard_3min 12008 12069 12067 +59 -2 +0.4913% -0.0166%
MTAC_Yeast_Standard_5min 12561 12502 12508 -53 +6 -0.4219% +0.0480%
Olsen_Astral_3P 236395 245403
Olsen_Exploris_3P 146224 153564
SCIEX_3P 70810 73932
SCP_Astral_1000pg_12ms 9163 9668 9538 +375 -130 +4.0925% -1.3446%
SCP_Astral_1000pg_24ms 9298 9832 9857 +559 +25 +6.0120% +0.2543%
SCP_Astral_1000pg_3ms 2450 6312 6084 +3634 -228 +148.3265% -3.6122%
SCP_Astral_1000pg_6ms 4703 4677 4588 -115 -89 -2.4452% -1.9029%
SCP_Astral_10ng_12ms 16190 16315 16202 +12 -113 +0.0741% -0.6926%
SCP_Astral_10ng_24ms 13599 13739 13697 +98 -42 +0.7206% -0.3057%
SCP_Astral_10ng_6ms 17017 17164 17065 +48 -99 +0.2821% -0.5768%
SCP_Astral_10ng_ms 16252 16122 16276 +24 +154 +0.1477% +0.9552%
SCP_Astral_250pg_12ms 3647 3745 3913 +266 +168 +7.2937% +4.4860%
SCP_Astral_250pg_24ms 4300 4670 4603 +303 -67 +7.0465% -1.4347%
SCP_Astral_250pg_3ms 576 22 -554 -96.1806%
SCP_Astral_250pg_6ms 637 2055 2080 +1443 +25 +226.5306% +1.2165%
SCP_Astral_500pg_12ms 6245 6220 6346 +101 +126 +1.6173% +2.0257%
SCP_Astral_500pg_24ms 6722 6898 6729 +7 -169 +0.1041% -2.4500%
SCP_Astral_500pg_3ms 982 1170
SCP_Astral_500pg_6ms 3708 3661 4007 +299 +346 +8.0636% +9.4510%
SCP_Astral_MBR 20165 20244
Seer_Astral_45 225377 242409
Seer_Astral_single 4700 4662 -38 -0.8085%
YEAST_KO_Astral 1300836 1391617
EWZ_2P_MBR_Exploris 239484 246519
EWZ_2P_noMBR_Exploris 235990 244716

Metric: identification.protein_groups.unique

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 21740 29019
KEAP1KO_Eclipse 7845 8124
MTAC_3P_Alternating 11361 11464
MTAC_3P_Standard 11473 11635
MTAC_Yeast_Alternating_3min 4138 4135 -3 -0.0725%
MTAC_Yeast_Alternating_5min 4215 4245 4239 +24 -6 +0.5694% -0.1413%
MTAC_Yeast_Standard_3min 4075 4129 4140 +65 +11 +1.5951% +0.2664%
MTAC_Yeast_Standard_5min 4249 4255 4249 +0 -6 +0% -0.1410%
Olsen_Astral_3P 13820 14376
Olsen_Exploris_3P 7255 7563
SCIEX_3P 8652 9058
SCP_Astral_1000pg_12ms 3245 3455 3397 +152 -58 +4.6841% -1.6787%
SCP_Astral_1000pg_24ms 3254 3463 3466 +212 +3 +6.5151% +0.0866%
SCP_Astral_1000pg_3ms 2450 2461 2396 -54 -65 -2.2041% -2.6412%
SCP_Astral_1000pg_6ms 2508 2505 2436 -72 -69 -2.8708% -2.7545%
SCP_Astral_10ng_12ms 5579 5673 5627 +48 -46 +0.8604% -0.8109%
SCP_Astral_10ng_24ms 4721 4760 4754 +33 -6 +0.6990% -0.1261%
SCP_Astral_10ng_6ms 5846 5960 5901 +55 -59 +0.9408% -0.9899%
SCP_Astral_10ng_ms 5611 5600 5655 +44 +55 +0.7842% +0.9821%
SCP_Astral_250pg_12ms 1292 1361 1424 +132 +63 +10.2167% +4.6289%
SCP_Astral_250pg_24ms 1568 1695 1660 +92 -35 +5.8673% -2.0649%
SCP_Astral_250pg_3ms 307 8 -299 -97.3941%
SCP_Astral_250pg_6ms 637 745 756 +119 +11 +18.6813% +1.4765%
SCP_Astral_500pg_12ms 2207 2260 2275 +68 +15 +3.0811% +0.6637%
SCP_Astral_500pg_24ms 2403 2443 2388 -15 -55 -0.6242% -2.2513%
SCP_Astral_500pg_3ms 525 434
SCP_Astral_500pg_6ms 1318 1319 1447 +129 +128 +9.7876% +9.7043%
SCP_Astral_MBR 4708 4751
Seer_Astral_45 5802 6233
Seer_Astral_single 4700 4662 -38 -0.8085%
YEAST_KO_Astral 4565 4819
EWZ_2P_MBR_Exploris 6831 7057
EWZ_2P_noMBR_Exploris 6858 7108

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0006 -0.0003
MTAC_3P_Alternating_Entrapment -0.0005 -0.0002
MTAC_3P_Standard_Entrapment -0.0014 -0.0003
MTAC_Yeast_Alternating_3min_Entrapment -0.0014 -0.0020 -0.0006
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0006 -0.0013 -0.0009 -0.0007
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0017 -0.0013 +0.0006 +0.0004
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0017 -0.0020 -0.0009 -0.0003
Olsen_Astral_3P_Entrapment -0.0015 -0.0010
Olsen_Exploris_3P_Entrapment -0.0002 -0.0004
SCIEX_3P_Entrapment -0.0005 0.0002
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0026 -0.0016 +0.0007 +0.0010
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0023
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0052 -0.0037 -0.0007 +0.0015
SCP_Astral_1000pg_6ms_Entrapment -0.0002 -0.0029 -0.0011 -0.0009 +0.0018
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0010
SCP_Astral_10ng_24ms_Entrapment -0.0020 -0.0001
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0027
SCP_Astral_10ng_6ms_Entrapment -0.0008 -0.0003
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0037
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0033
SCP_Astral_250pg_6ms_Entrapment -0.0051
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0028
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0024
SCP_Astral_500pg_3ms_Entrapment -0.0023
SCP_Astral_500pg_6ms_Entrapment -0.0042
SCP_Astral_MBR_Entrapment -0.0026 -0.0018
YEAST_KO_Astral_Entrapment -0.0024

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0010 -0.0024
MTAC_3P_Alternating_Entrapment -0.0010 0.0001
MTAC_3P_Standard_Entrapment -0.0013 -0.0025
MTAC_Yeast_Alternating_3min_Entrapment -0.0042 -0.0050 -0.0008
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0043 -0.0038 +0.0003 +0.0005
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0040 -0.0050 +0.0008 -0.0010
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0053 -0.0045 -0.0009 +0.0008
Olsen_Astral_3P_Entrapment -0.0041 -0.0024
Olsen_Exploris_3P_Entrapment -0.0029 -0.0014
SCIEX_3P_Entrapment -0.0031 -0.0046
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0039 -0.0046 +0.0003 -0.0007
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0057
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0060 -0.0036 +0.0023 +0.0024
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0070 -0.0049 -0.0032 +0.0021
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0042 -0.0049 +0.0005 -0.0008
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0036 -0.0023 +0.0009 +0.0013
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0057 -0.0073 -0.0036 -0.0016
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0041 -0.0023 +0.0031 +0.0018
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0083 -0.0076 -0.0023 +0.0007
SCP_Astral_250pg_24ms_Entrapment -0.0042 -0.0044 -0.0042 -0.0000 +0.0002
SCP_Astral_250pg_3ms_Entrapment -0.0028 0.0215 0 +0.0028 -0.0215
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0051 -0.0067 +0.0032 -0.0016
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0049 -0.0054 -0.0018 -0.0006
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0015 -0.0008 +0.0012 +0.0006
SCP_Astral_500pg_3ms_Entrapment -0.0042 -0.0014 0.0071 +0.0112 +0.0085
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0068
SCP_Astral_MBR_Entrapment -0.0059 -0.0023
YEAST_KO_Astral_Entrapment -0.0065

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0005 -0.0004
MTAC_3P_Alternating_Entrapment -0.0001 0.0003
MTAC_3P_Standard_Entrapment -0.0009 -0.0001
MTAC_Yeast_Alternating_3min_Entrapment -0.0007 -0.0013 -0.0006
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0002 -0.0008 -0.0004 -0.0006
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0009 -0.0007 +0.0001 +0.0002
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0010 -0.0010 -0.0002 +0.0000
Olsen_Astral_3P_Entrapment -0.0008 -0.0005
Olsen_Exploris_3P_Entrapment -0.0004 0.0003
SCIEX_3P_Entrapment -0.0005 0.0002
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0022 -0.0013 +0.0002 +0.0009
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0023
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0028 -0.0022 -0.0002 +0.0006
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0026 -0.0006 -0.0008 +0.0020
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0005
SCP_Astral_10ng_24ms_Entrapment -0.0014 -0.0001
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0020
SCP_Astral_10ng_6ms_Entrapment -0.0005 -0.0001
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0036
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0017
SCP_Astral_250pg_6ms_Entrapment -0.0037
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0020
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0025
SCP_Astral_500pg_3ms_Entrapment -0.0006
SCP_Astral_500pg_6ms_Entrapment -0.0036
SCP_Astral_MBR_Entrapment -0.0017 -0.0014
YEAST_KO_Astral_Entrapment -0.0013

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0002 -0.0015
MTAC_3P_Alternating_Entrapment -0.0001 -0.0001
MTAC_3P_Standard_Entrapment -0.0008 -0.0014
MTAC_Yeast_Alternating_3min_Entrapment -0.0036 -0.0030 +0.0006
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0026 -0.0021 +0.0016 +0.0005
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0025 -0.0032 +0.0006 -0.0007
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0035 -0.0027 -0.0004 +0.0008
Olsen_Astral_3P_Entrapment -0.0024 -0.0018
Olsen_Exploris_3P_Entrapment -0.0026 -0.0004
SCIEX_3P_Entrapment -0.0036 -0.0036
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0036 -0.0032 +0.0005 +0.0004
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0029
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0028 -0.0016 +0.0028 +0.0013
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0052 -0.0035 -0.0010 +0.0017
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0036 -0.0032 +0.0015 +0.0004
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0032 -0.0014 +0.0018 +0.0018
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0033 -0.0046 -0.0025 -0.0013
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0039 -0.0030 +0.0009 +0.0009
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0040 -0.0041 -0.0002 -0.0001
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0012 -0.0032 -0.0018 -0.0020
SCP_Astral_250pg_3ms_Entrapment -0.0060 0.0023 -0.0082 -0.0021 -0.0105
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0044 -0.0068 +0.0032 -0.0024
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0026 -0.0040 -0.0001 -0.0014
SCP_Astral_500pg_24ms_Entrapment -0.0019 -0.0012 -0.0001 +0.0019 +0.0011
SCP_Astral_500pg_3ms_Entrapment -0.0032 -0.0015 0.0066 +0.0099 +0.0081
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0036
SCP_Astral_MBR_Entrapment -0.0024 -0.0017
YEAST_KO_Astral_Entrapment -0.0041

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131 0.0082

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476 0.0315

keap1.precursors

Dataset Gene Run v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1 +1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1 +1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 2 +2
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 14 +5
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 13 +4
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 13 +3
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 +0

keap1.protein_groups

Dataset Gene Run v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 1 +1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 +0

Metric: cv.precursors.median_cv

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1429
MTAC_3P_Standard 0.1393 0.1377
MTAC_Yeast_Alternating_3min 0.1462 0.1456 -0.0006
MTAC_Yeast_Alternating_5min 0.1531 0.1416 0.1403 -0.0128 -0.0013
MTAC_Yeast_Standard_3min 0.1698 0.1646 0.1641 -0.0057 -0.0005
MTAC_Yeast_Standard_5min 0.1503 0.1377 0.1369 -0.0134 -0.0008
Olsen_Astral_3P 0.0823 0.0891
Olsen_Exploris_3P 0.1480 0.1524
SCIEX_3P 0.1284 0.1343

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0749
MTAC_3P_Standard 0.0723 0.0711
MTAC_Yeast_Alternating_3min 0.0678 0.0670 -0.0008
MTAC_Yeast_Alternating_5min 0.0778 0.0606 0.0597 -0.0180 -0.0008
MTAC_Yeast_Standard_3min 0.0792 0.0768 0.0764 -0.0028 -0.0004
MTAC_Yeast_Standard_5min 0.0770 0.0579 0.0567 -0.0204 -0.0012
Olsen_Astral_3P 0.0374 0.0378
Olsen_Exploris_3P 0.1028 0.1031
SCIEX_3P 0.0864 0.0879

fold_change.error.precursors

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0751 +0.0037
MTAC_3P_Alternating human A vs B -0.0432 -0.0397 -0.0034
MTAC_3P_Alternating yeast A vs B -0.0026 -0.0020 -0.0005
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1269 +0.0024
MTAC_3P_Standard human A vs B -0.0785 -0.0744 -0.0041
MTAC_3P_Standard yeast A vs B -0.0337 -0.0292 -0.0045
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0543 -0.0027
Olsen_Astral_3P ecoli D vs C -0.2013 -0.1962 -0.0051
Olsen_Astral_3P ecoli F vs E 0.0193 0.0173 -0.0020
Olsen_Astral_3P human B vs A -0.0036 -0.0107 +0.0071
Olsen_Astral_3P human D vs C -0.3258 -0.3321 +0.0064
Olsen_Astral_3P human F vs E 0.0777 0.0758 -0.0019
Olsen_Astral_3P yeast B vs A 0.0756 0.0727 -0.0029
Olsen_Astral_3P yeast D vs C -0.2263 -0.2305 +0.0042
Olsen_Astral_3P yeast F vs E 0.1940 0.1972 +0.0032
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2360 +0.0088
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0753 +0.0066
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2789 +0.0233
Olsen_Exploris_3P human B vs A 0.0955 0.1053 +0.0098
Olsen_Exploris_3P human D vs C -0.0535 -0.0550 +0.0015
Olsen_Exploris_3P human F vs E 0.1998 0.2109 +0.0111
Olsen_Exploris_3P yeast B vs A 0.0478 0.0402 -0.0076
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1101 +0.0026
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0807 +0.0128
SCIEX_3P ecoli B vs A -0.0531 -0.0599 +0.0067
SCIEX_3P ecoli C vs A -0.0580 -0.0519 -0.0061
SCIEX_3P ecoli C vs B -0.0146 -0.0006 -0.0140
SCIEX_3P human B vs A -0.0334 -0.0497 +0.0163
SCIEX_3P human C vs A -0.0804 -0.0848 +0.0044
SCIEX_3P human C vs B -0.0484 -0.0367 -0.0117
SCIEX_3P yeast B vs A -0.0084 -0.0299 +0.0214
SCIEX_3P yeast C vs A -0.1064 -0.1211 +0.0148
SCIEX_3P yeast C vs B -0.0912 -0.0859 -0.0053

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0668 +0.0014
MTAC_3P_Alternating human A vs B -0.0451 -0.0404 -0.0047
MTAC_3P_Alternating yeast A vs B 0.0016 0.0011 -0.0005
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1253 +0.0008
MTAC_3P_Standard human A vs B -0.0772 -0.0715 -0.0057
MTAC_3P_Standard yeast A vs B -0.0322 -0.0272 -0.0050
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0418 -0.0035
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1627 +0.0013
Olsen_Astral_3P ecoli F vs E 0.0601 0.0550 -0.0051
Olsen_Astral_3P human B vs A -0.0149 -0.0228 +0.0079
Olsen_Astral_3P human D vs C -0.2928 -0.2990 +0.0062
Olsen_Astral_3P human F vs E 0.0700 0.0688 -0.0012
Olsen_Astral_3P yeast B vs A 0.0543 0.0518 -0.0025
Olsen_Astral_3P yeast D vs C -0.1994 -0.2025 +0.0031
Olsen_Astral_3P yeast F vs E 0.1690 0.1688 -0.0002
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2238 +0.0066
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0718 +0.0054
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3105 +0.0547
Olsen_Exploris_3P human B vs A 0.0841 0.0903 +0.0062
Olsen_Exploris_3P human D vs C -0.0502 -0.0527 +0.0025
Olsen_Exploris_3P human F vs E 0.1988 0.2079 +0.0091
Olsen_Exploris_3P yeast B vs A 0.0433 0.0358 -0.0076
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1148 +0.0053
Olsen_Exploris_3P yeast F vs E -0.0534 -0.0975 +0.0441
SCIEX_3P ecoli B vs A -0.0415 -0.0571 +0.0155
SCIEX_3P ecoli C vs A -0.0531 -0.0522 -0.0009
SCIEX_3P ecoli C vs B -0.0149 0.0005 -0.0144
SCIEX_3P human B vs A -0.0318 -0.0495 +0.0177
SCIEX_3P human C vs A -0.0819 -0.0870 +0.0052
SCIEX_3P human C vs B -0.0489 -0.0374 -0.0115
SCIEX_3P yeast B vs A -0.0091 -0.0337 +0.0246
SCIEX_3P yeast C vs A -0.1151 -0.1322 +0.0171
SCIEX_3P yeast C vs B -0.1020 -0.0935 -0.0085

fold_change.variance.precursors

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.2911 +0.0292
MTAC_3P_Alternating human A vs B 0.1984 0.2179 +0.0195
MTAC_3P_Alternating yeast A vs B 0.2558 0.2676 +0.0118
MTAC_3P_Standard ecoli A vs B 0.2681 0.2877 +0.0196
MTAC_3P_Standard human A vs B 0.2062 0.2259 +0.0197
MTAC_3P_Standard yeast A vs B 0.2555 0.2733 +0.0178
Olsen_Astral_3P ecoli B vs A 0.5438 0.5704 +0.0266
Olsen_Astral_3P ecoli D vs C 0.3566 0.3675 +0.0109
Olsen_Astral_3P ecoli F vs E 1.1682 1.3118 +0.1436
Olsen_Astral_3P human B vs A 0.2100 0.2412 +0.0312
Olsen_Astral_3P human D vs C 0.2930 0.3360 +0.0430
Olsen_Astral_3P human F vs E 0.3046 0.3324 +0.0277
Olsen_Astral_3P yeast B vs A 0.2937 0.3203 +0.0266
Olsen_Astral_3P yeast D vs C 0.2553 0.2739 +0.0186
Olsen_Astral_3P yeast F vs E 0.4774 0.5121 +0.0347
Olsen_Exploris_3P ecoli B vs A 0.5783 0.5814 +0.0031
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1567 -0.0061
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8052 +0.0008
Olsen_Exploris_3P human B vs A 0.3372 0.3694 +0.0322
Olsen_Exploris_3P human D vs C 0.1096 0.1181 +0.0085
Olsen_Exploris_3P human F vs E 0.3024 0.3240 +0.0216
Olsen_Exploris_3P yeast B vs A 0.6189 0.6425 +0.0236
Olsen_Exploris_3P yeast D vs C 0.1498 0.1686 +0.0188
Olsen_Exploris_3P yeast F vs E 1.0859 1.0787 -0.0072
SCIEX_3P ecoli B vs A 0.5007 0.4905 -0.0102
SCIEX_3P ecoli C vs A 0.5855 0.5767 -0.0088
SCIEX_3P ecoli C vs B 0.1466 0.1652 +0.0186
SCIEX_3P human B vs A 0.1942 0.2196 +0.0254
SCIEX_3P human C vs A 0.2171 0.2446 +0.0276
SCIEX_3P human C vs B 0.1705 0.1937 +0.0231
SCIEX_3P yeast B vs A 0.2341 0.2508 +0.0166
SCIEX_3P yeast C vs A 0.5719 0.5691 -0.0028
SCIEX_3P yeast C vs B 0.4881 0.5289 +0.0408

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1317 +0.0022
MTAC_3P_Alternating human A vs B 0.0731 0.0736 +0.0005
MTAC_3P_Alternating yeast A vs B 0.1300 0.1157 -0.0143
MTAC_3P_Standard ecoli A vs B 0.1320 0.1269 -0.0051
MTAC_3P_Standard human A vs B 0.0679 0.0676 -0.0003
MTAC_3P_Standard yeast A vs B 0.1262 0.1293 +0.0031
Olsen_Astral_3P ecoli B vs A 0.1924 0.1962 +0.0038
Olsen_Astral_3P ecoli D vs C 0.1089 0.1127 +0.0038
Olsen_Astral_3P ecoli F vs E 0.3405 0.3702 +0.0297
Olsen_Astral_3P human B vs A 0.0420 0.0418 -0.0002
Olsen_Astral_3P human D vs C 0.0549 0.0617 +0.0068
Olsen_Astral_3P human F vs E 0.0528 0.0527 -0.0002
Olsen_Astral_3P yeast B vs A 0.0563 0.0495 -0.0068
Olsen_Astral_3P yeast D vs C 0.0483 0.0508 +0.0026
Olsen_Astral_3P yeast F vs E 0.0959 0.1075 +0.0116
Olsen_Exploris_3P ecoli B vs A 0.2033 0.2648 +0.0614
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0455 -0.0181
Olsen_Exploris_3P ecoli F vs E 0.4584 0.4731 +0.0147
Olsen_Exploris_3P human B vs A 0.0646 0.0735 +0.0089
Olsen_Exploris_3P human D vs C 0.0301 0.0312 +0.0012
Olsen_Exploris_3P human F vs E 0.0759 0.0848 +0.0089
Olsen_Exploris_3P yeast B vs A 0.2336 0.2434 +0.0098
Olsen_Exploris_3P yeast D vs C 0.0715 0.0935 +0.0220
Olsen_Exploris_3P yeast F vs E 0.5309 0.4381 -0.0928
SCIEX_3P ecoli B vs A 0.2191 0.2018 -0.0173
SCIEX_3P ecoli C vs A 0.2647 0.2310 -0.0337
SCIEX_3P ecoli C vs B 0.0574 0.0744 +0.0170
SCIEX_3P human B vs A 0.0657 0.0731 +0.0074
SCIEX_3P human C vs A 0.0731 0.0813 +0.0082
SCIEX_3P human C vs B 0.0556 0.0685 +0.0129
SCIEX_3P yeast B vs A 0.1098 0.0860 -0.0238
SCIEX_3P yeast C vs A 0.2938 0.2690 -0.0247
SCIEX_3P yeast C vs B 0.2531 0.2669 +0.0138

Metric: runtime

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 247.2300 528.7400
KEAP1KO_Eclipse 24.0700 43
MTAC_3P_Alternating 12.7500 35.3300
MTAC_3P_Standard 12.3100 216.0300
MTAC_Yeast_Alternating_3min 97.2100 4.1100 -93.1000 -95.7720%
MTAC_Yeast_Alternating_5min 5.3800 11.7900 4.5600 -0.8200 -7.2300 -15.2416% -61.3232%
MTAC_Yeast_Standard_3min 5.4300 81.7200 4.0400 -1.3900 -77.6800 -25.5985% -95.0563%
MTAC_Yeast_Standard_5min 5.5500 19.4900 4.2300 -1.3200 -15.2600 -23.7838% -78.2966%
Olsen_Astral_3P 76.4000 169.8700
Olsen_Exploris_3P 27.6600 54.9900
SCIEX_3P 30.2900 69.8500
SCP_Astral_1000pg_12ms 5.7900 15.1900 4.1800 -1.6100 -11.0100 -27.8066% -72.4819%
SCP_Astral_1000pg_24ms 6.2600 11.9700 4.7900 -1.4700 -7.1800 -23.4824% -59.9833%
SCP_Astral_1000pg_3ms 4.5200 196.5000 3.7900 -0.7300 -192.7100 -16.1504% -98.0712%
SCP_Astral_1000pg_6ms 5.7400 11.4700 3.5300 -2.2100 -7.9400 -38.5017% -69.2241%
SCP_Astral_10ng_12ms 7.0700 14.3000 5.4700 -1.6000 -8.8300 -22.6308% -61.7483%
SCP_Astral_10ng_24ms 7.5900 14.9200 5.7700 -1.8200 -9.1500 -23.9789% -61.3271%
SCP_Astral_10ng_6ms 7.3800 12.4600 4.9900 -2.3900 -7.4700 -32.3848% -59.9518%
SCP_Astral_10ng_ms 6.4500 10.7600 4.6400 -1.8100 -6.1200 -28.0620% -56.8773%
SCP_Astral_250pg_12ms 4.7400 11.7200
SCP_Astral_250pg_24ms 5.2600 7.8500 3.6700 -1.5900 -4.1800 -30.2281% -53.2484%
SCP_Astral_250pg_3ms 4.6500 3.5100 -1.1400 -24.5161%
SCP_Astral_250pg_6ms 4.1700 10.9200 3.2900 -0.8800 -7.6300 -21.1031% -69.8718%
SCP_Astral_500pg_12ms 5.2800 11.4700
SCP_Astral_500pg_24ms 5.5100 9.7200 3.8500 -1.6600 -5.8700 -30.1270% -60.3909%
SCP_Astral_500pg_3ms 4.7300 8.0500
SCP_Astral_500pg_6ms 4.6500 10.4100 3.5900 -1.0600 -6.8200 -22.7957% -65.5139%
SCP_Astral_MBR 9.0400 12.7700
Seer_Astral_45 100.3500 154.0300
Seer_Astral_single 13.6800 4.4300 -9.2500 -67.6170%
YEAST_KO_Astral 235.6300 456.7200
EWZ_2P_MBR_Exploris 29 53.7200
EWZ_2P_noMBR_Exploris 27.1100 52.4300

MTAC_Yeast_Alternating_3min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Alternating_5min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Standard_3min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Standard_5min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_3ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png