Regression Metrics Report

Versions: v0.6.4, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 5499336 8338453
KEAP1KO_Eclipse 1096494 1266211
MTAC_3P_Alternating 586322 617230
MTAC_3P_Standard 596590 624975 624459 +27869 -516 +4.6714% -0.0826%
MTAC_Yeast_Alternating_3min 137621
MTAC_Yeast_Alternating_5min 155641 156513
MTAC_Yeast_Standard_3min 138509 139769
MTAC_Yeast_Standard_5min 158962 159012
Olsen_Astral_3P 3282083 3758538
Olsen_Exploris_3P 1022736 1168290
SCIEX_3P 672242 745684
SCP_Astral_1000pg_12ms 40882 42291
SCP_Astral_1000pg_24ms 41069 42909
SCP_Astral_1000pg_3ms 8740 23167
SCP_Astral_1000pg_6ms 16935 17612
SCP_Astral_10ng_12ms 99908 103367
SCP_Astral_10ng_24ms 71098 72640
SCP_Astral_10ng_6ms 115157 117666
SCP_Astral_10ng_ms 105704 105740
SCP_Astral_250pg_12ms 10194 10638
SCP_Astral_250pg_24ms 14807 15433
SCP_Astral_250pg_3ms 1261
SCP_Astral_250pg_6ms 1436 4800
SCP_Astral_500pg_12ms 21710 21916
SCP_Astral_500pg_24ms 25860 26194
SCP_Astral_500pg_3ms 3484 5754
SCP_Astral_500pg_6ms 10699 11408
SCP_Astral_MBR 92167 94498
Seer_Astral_45 2512737 3143498
Seer_Astral_single 56384
YEAST_KO_Astral 16088274 20553710
EWZ_2P_MBR_Exploris 1662994 1810796
EWZ_2P_noMBR_Exploris 1608906 1774314

Metric: identification.precursors.unique

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 246168 440308
KEAP1KO_Eclipse 111504 127314
MTAC_3P_Alternating 108267 117978
MTAC_3P_Standard 110265 119192 119168 +8903 -24 +8.0742% -0.0201%
MTAC_Yeast_Alternating_3min 48840
MTAC_Yeast_Alternating_5min 53969 55176
MTAC_Yeast_Standard_3min 48621 49985
MTAC_Yeast_Standard_5min 55060 56016
Olsen_Astral_3P 198770 231191
Olsen_Exploris_3P 51272 58723
SCIEX_3P 82206 93491
SCP_Astral_1000pg_12ms 14440 15018
SCP_Astral_1000pg_24ms 14483 15141
SCP_Astral_1000pg_3ms 8740 9394
SCP_Astral_1000pg_6ms 8898 9259
SCP_Astral_10ng_12ms 34865 36385
SCP_Astral_10ng_24ms 24649 25341
SCP_Astral_10ng_6ms 40156 41599
SCP_Astral_10ng_ms 36688 37469
SCP_Astral_250pg_12ms 3666 3897
SCP_Astral_250pg_24ms 5299 5558
SCP_Astral_250pg_3ms 675
SCP_Astral_250pg_6ms 1436 1742
SCP_Astral_500pg_12ms 7794 7947
SCP_Astral_500pg_24ms 9158 9305
SCP_Astral_500pg_3ms 1846 2091
SCP_Astral_500pg_6ms 3874 4136
SCP_Astral_MBR 24110 24952
Seer_Astral_45 69584 89483
Seer_Astral_single 56384
YEAST_KO_Astral 66823 87737
EWZ_2P_MBR_Exploris 50700 56084
EWZ_2P_noMBR_Exploris 50591 56348

Metric: identification.protein_groups.total

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 603278 767892
KEAP1KO_Eclipse 87920 93416
MTAC_3P_Alternating 63773 63963
MTAC_3P_Standard 64317 64677 64438 +121 -239 +0.1881% -0.3695%
MTAC_Yeast_Alternating_3min 12079
MTAC_Yeast_Alternating_5min 12432 12455
MTAC_Yeast_Standard_3min 12008 12069
MTAC_Yeast_Standard_5min 12561 12502
Olsen_Astral_3P 236395 245403
Olsen_Exploris_3P 146224 153564
SCIEX_3P 70810 73932
SCP_Astral_1000pg_12ms 9163 9668
SCP_Astral_1000pg_24ms 9298 9832
SCP_Astral_1000pg_3ms 2450 6312
SCP_Astral_1000pg_6ms 4703 4677
SCP_Astral_10ng_12ms 16190 16315
SCP_Astral_10ng_24ms 13599 13739
SCP_Astral_10ng_6ms 17017 17164
SCP_Astral_10ng_ms 16252 16122
SCP_Astral_250pg_12ms 3647 3745
SCP_Astral_250pg_24ms 4300 4670
SCP_Astral_250pg_3ms 576
SCP_Astral_250pg_6ms 637 2055
SCP_Astral_500pg_12ms 6245 6220
SCP_Astral_500pg_24ms 6722 6898
SCP_Astral_500pg_3ms 982 1170
SCP_Astral_500pg_6ms 3708 3661
SCP_Astral_MBR 20165 20244
Seer_Astral_45 225377 242409
Seer_Astral_single 4700
YEAST_KO_Astral 1300836 1391617
EWZ_2P_MBR_Exploris 239484 246519
EWZ_2P_noMBR_Exploris 235990 244716

Metric: identification.protein_groups.unique

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 21740 29019
KEAP1KO_Eclipse 7845 8124
MTAC_3P_Alternating 11361 11464
MTAC_3P_Standard 11473 11635 11535 +62 -100 +0.5404% -0.8595%
MTAC_Yeast_Alternating_3min 4138
MTAC_Yeast_Alternating_5min 4215 4245
MTAC_Yeast_Standard_3min 4075 4129
MTAC_Yeast_Standard_5min 4249 4255
Olsen_Astral_3P 13820 14376
Olsen_Exploris_3P 7255 7563
SCIEX_3P 8652 9058
SCP_Astral_1000pg_12ms 3245 3455
SCP_Astral_1000pg_24ms 3254 3463
SCP_Astral_1000pg_3ms 2450 2461
SCP_Astral_1000pg_6ms 2508 2505
SCP_Astral_10ng_12ms 5579 5673
SCP_Astral_10ng_24ms 4721 4760
SCP_Astral_10ng_6ms 5846 5960
SCP_Astral_10ng_ms 5611 5600
SCP_Astral_250pg_12ms 1292 1361
SCP_Astral_250pg_24ms 1568 1695
SCP_Astral_250pg_3ms 307
SCP_Astral_250pg_6ms 637 745
SCP_Astral_500pg_12ms 2207 2260
SCP_Astral_500pg_24ms 2403 2443
SCP_Astral_500pg_3ms 525 434
SCP_Astral_500pg_6ms 1318 1319
SCP_Astral_MBR 4708 4751
Seer_Astral_45 5802 6233
Seer_Astral_single 4700
YEAST_KO_Astral 4565 4819
EWZ_2P_MBR_Exploris 6831 7057
EWZ_2P_noMBR_Exploris 6858 7108

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0006 -0.0003
MTAC_3P_Alternating_Entrapment -0.0005 -0.0002
MTAC_3P_Standard_Entrapment -0.0014 -0.0003
MTAC_Yeast_Alternating_3min_Entrapment -0.0014
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0006
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0017
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0017
Olsen_Astral_3P_Entrapment -0.0015 -0.0010
Olsen_Exploris_3P_Entrapment -0.0002 -0.0004
SCIEX_3P_Entrapment -0.0005 0.0002
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0026
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0023
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0052
SCP_Astral_1000pg_6ms_Entrapment -0.0002 -0.0029
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0010
SCP_Astral_10ng_24ms_Entrapment -0.0020 -0.0001
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0027
SCP_Astral_10ng_6ms_Entrapment -0.0008 -0.0003
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0037
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0033
SCP_Astral_250pg_6ms_Entrapment -0.0051
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0028
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0024
SCP_Astral_500pg_3ms_Entrapment -0.0023
SCP_Astral_500pg_6ms_Entrapment -0.0042
SCP_Astral_MBR_Entrapment -0.0026 -0.0018
YEAST_KO_Astral_Entrapment -0.0024

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0010 -0.0024
MTAC_3P_Alternating_Entrapment -0.0010 0.0001
MTAC_3P_Standard_Entrapment -0.0013 -0.0025
MTAC_Yeast_Alternating_3min_Entrapment -0.0042
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0043
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0040
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0053
Olsen_Astral_3P_Entrapment -0.0041 -0.0024
Olsen_Exploris_3P_Entrapment -0.0029 -0.0014
SCIEX_3P_Entrapment -0.0031 -0.0046
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0039
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0057
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0060
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0070
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0042
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0036
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0057
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0041
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0083
SCP_Astral_250pg_24ms_Entrapment -0.0042 -0.0044
SCP_Astral_250pg_3ms_Entrapment -0.0028 0.0215
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0051
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0049
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0015
SCP_Astral_500pg_3ms_Entrapment -0.0042 -0.0014
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0068
SCP_Astral_MBR_Entrapment -0.0059 -0.0023
YEAST_KO_Astral_Entrapment -0.0065

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0005 -0.0004
MTAC_3P_Alternating_Entrapment -0.0001 0.0003
MTAC_3P_Standard_Entrapment -0.0009 -0.0001
MTAC_Yeast_Alternating_3min_Entrapment -0.0007
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0002
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0009
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0010
Olsen_Astral_3P_Entrapment -0.0008 -0.0005
Olsen_Exploris_3P_Entrapment -0.0004 0.0003
SCIEX_3P_Entrapment -0.0005 0.0002
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0022
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0023
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0028
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0026
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0005
SCP_Astral_10ng_24ms_Entrapment -0.0014 -0.0001
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0020
SCP_Astral_10ng_6ms_Entrapment -0.0005 -0.0001
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0036
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0017
SCP_Astral_250pg_6ms_Entrapment -0.0037
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0020
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0025
SCP_Astral_500pg_3ms_Entrapment -0.0006
SCP_Astral_500pg_6ms_Entrapment -0.0036
SCP_Astral_MBR_Entrapment -0.0017 -0.0014
YEAST_KO_Astral_Entrapment -0.0013

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0002 -0.0015
MTAC_3P_Alternating_Entrapment -0.0001 -0.0001
MTAC_3P_Standard_Entrapment -0.0008 -0.0014
MTAC_Yeast_Alternating_3min_Entrapment -0.0036
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0026
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0025
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0035
Olsen_Astral_3P_Entrapment -0.0024 -0.0018
Olsen_Exploris_3P_Entrapment -0.0026 -0.0004
SCIEX_3P_Entrapment -0.0036 -0.0036
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0036
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0029
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0028
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0052
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0036
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0032
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0033
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0039
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0040
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0012
SCP_Astral_250pg_3ms_Entrapment -0.0060 0.0023
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0044
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0026
SCP_Astral_500pg_24ms_Entrapment -0.0019 -0.0012
SCP_Astral_500pg_3ms_Entrapment -0.0032 -0.0015
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0036
SCP_Astral_MBR_Entrapment -0.0024 -0.0017
YEAST_KO_Astral_Entrapment -0.0041

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131 0.0082

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476 0.0315

keap1.precursors

Dataset Gene Run v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1 +1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1 +1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 2 +2
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 14 +5
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 13 +4
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 13 +3
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 +0

keap1.protein_groups

Dataset Gene Run v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 1 +1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 +0

Metric: cv.precursors.median_cv

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1429
MTAC_3P_Standard 0.1393 0.1377 0.1375 -0.0018 -0.0002
MTAC_Yeast_Alternating_3min 0.1462
MTAC_Yeast_Alternating_5min 0.1531 0.1416
MTAC_Yeast_Standard_3min 0.1698 0.1646
MTAC_Yeast_Standard_5min 0.1503 0.1377
Olsen_Astral_3P 0.0823 0.0891
Olsen_Exploris_3P 0.1480 0.1524
SCIEX_3P 0.1284 0.1343

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0749
MTAC_3P_Standard 0.0723 0.0711 0.0712 -0.0011 +0.0001
MTAC_Yeast_Alternating_3min 0.0678
MTAC_Yeast_Alternating_5min 0.0778 0.0606
MTAC_Yeast_Standard_3min 0.0792 0.0768
MTAC_Yeast_Standard_5min 0.0770 0.0579
Olsen_Astral_3P 0.0374 0.0378
Olsen_Exploris_3P 0.1028 0.1031
SCIEX_3P 0.0864 0.0879

fold_change.error.precursors

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0751 +0.0037
MTAC_3P_Alternating human A vs B -0.0432 -0.0397 -0.0034
MTAC_3P_Alternating yeast A vs B -0.0026 -0.0020 -0.0005
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1269 -0.1279 +0.0024 +0.0010
MTAC_3P_Standard human A vs B -0.0785 -0.0744 -0.0748 -0.0041 +0.0004
MTAC_3P_Standard yeast A vs B -0.0337 -0.0292 -0.0282 -0.0045 -0.0010
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0543 -0.0027
Olsen_Astral_3P ecoli D vs C -0.2013 -0.1962 -0.0051
Olsen_Astral_3P ecoli F vs E 0.0193 0.0173 -0.0020
Olsen_Astral_3P human B vs A -0.0036 -0.0107 +0.0071
Olsen_Astral_3P human D vs C -0.3258 -0.3321 +0.0064
Olsen_Astral_3P human F vs E 0.0777 0.0758 -0.0019
Olsen_Astral_3P yeast B vs A 0.0756 0.0727 -0.0029
Olsen_Astral_3P yeast D vs C -0.2263 -0.2305 +0.0042
Olsen_Astral_3P yeast F vs E 0.1940 0.1972 +0.0032
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2360 +0.0088
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0753 +0.0066
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2789 +0.0233
Olsen_Exploris_3P human B vs A 0.0955 0.1053 +0.0098
Olsen_Exploris_3P human D vs C -0.0535 -0.0550 +0.0015
Olsen_Exploris_3P human F vs E 0.1998 0.2109 +0.0111
Olsen_Exploris_3P yeast B vs A 0.0478 0.0402 -0.0076
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1101 +0.0026
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0807 +0.0128
SCIEX_3P ecoli B vs A -0.0531 -0.0599 +0.0067
SCIEX_3P ecoli C vs A -0.0580 -0.0519 -0.0061
SCIEX_3P ecoli C vs B -0.0146 -0.0006 -0.0140
SCIEX_3P human B vs A -0.0334 -0.0497 +0.0163
SCIEX_3P human C vs A -0.0804 -0.0848 +0.0044
SCIEX_3P human C vs B -0.0484 -0.0367 -0.0117
SCIEX_3P yeast B vs A -0.0084 -0.0299 +0.0214
SCIEX_3P yeast C vs A -0.1064 -0.1211 +0.0148
SCIEX_3P yeast C vs B -0.0912 -0.0859 -0.0053

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0668 +0.0014
MTAC_3P_Alternating human A vs B -0.0451 -0.0404 -0.0047
MTAC_3P_Alternating yeast A vs B 0.0016 0.0011 -0.0005
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1253 -0.1252 +0.0008 -0.0001
MTAC_3P_Standard human A vs B -0.0772 -0.0715 -0.0716 -0.0057 +0.0001
MTAC_3P_Standard yeast A vs B -0.0322 -0.0272 -0.0298 -0.0050 +0.0026
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0418 -0.0035
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1627 +0.0013
Olsen_Astral_3P ecoli F vs E 0.0601 0.0550 -0.0051
Olsen_Astral_3P human B vs A -0.0149 -0.0228 +0.0079
Olsen_Astral_3P human D vs C -0.2928 -0.2990 +0.0062
Olsen_Astral_3P human F vs E 0.0700 0.0688 -0.0012
Olsen_Astral_3P yeast B vs A 0.0543 0.0518 -0.0025
Olsen_Astral_3P yeast D vs C -0.1994 -0.2025 +0.0031
Olsen_Astral_3P yeast F vs E 0.1690 0.1688 -0.0002
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2238 +0.0066
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0718 +0.0054
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3105 +0.0547
Olsen_Exploris_3P human B vs A 0.0841 0.0903 +0.0062
Olsen_Exploris_3P human D vs C -0.0502 -0.0527 +0.0025
Olsen_Exploris_3P human F vs E 0.1988 0.2079 +0.0091
Olsen_Exploris_3P yeast B vs A 0.0433 0.0358 -0.0076
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1148 +0.0053
Olsen_Exploris_3P yeast F vs E -0.0534 -0.0975 +0.0441
SCIEX_3P ecoli B vs A -0.0415 -0.0571 +0.0155
SCIEX_3P ecoli C vs A -0.0531 -0.0522 -0.0009
SCIEX_3P ecoli C vs B -0.0149 0.0005 -0.0144
SCIEX_3P human B vs A -0.0318 -0.0495 +0.0177
SCIEX_3P human C vs A -0.0819 -0.0870 +0.0052
SCIEX_3P human C vs B -0.0489 -0.0374 -0.0115
SCIEX_3P yeast B vs A -0.0091 -0.0337 +0.0246
SCIEX_3P yeast C vs A -0.1151 -0.1322 +0.0171
SCIEX_3P yeast C vs B -0.1020 -0.0935 -0.0085

fold_change.variance.precursors

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.2911 +0.0292
MTAC_3P_Alternating human A vs B 0.1984 0.2179 +0.0195
MTAC_3P_Alternating yeast A vs B 0.2558 0.2676 +0.0118
MTAC_3P_Standard ecoli A vs B 0.2681 0.2877 0.2894 +0.0196 +0.0017
MTAC_3P_Standard human A vs B 0.2062 0.2259 0.2254 +0.0197 -0.0005
MTAC_3P_Standard yeast A vs B 0.2555 0.2733 0.2745 +0.0178 +0.0012
Olsen_Astral_3P ecoli B vs A 0.5438 0.5704 +0.0266
Olsen_Astral_3P ecoli D vs C 0.3566 0.3675 +0.0109
Olsen_Astral_3P ecoli F vs E 1.1682 1.3118 +0.1436
Olsen_Astral_3P human B vs A 0.2100 0.2412 +0.0312
Olsen_Astral_3P human D vs C 0.2930 0.3360 +0.0430
Olsen_Astral_3P human F vs E 0.3046 0.3324 +0.0277
Olsen_Astral_3P yeast B vs A 0.2937 0.3203 +0.0266
Olsen_Astral_3P yeast D vs C 0.2553 0.2739 +0.0186
Olsen_Astral_3P yeast F vs E 0.4774 0.5121 +0.0347
Olsen_Exploris_3P ecoli B vs A 0.5783 0.5814 +0.0031
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1567 -0.0061
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8052 +0.0008
Olsen_Exploris_3P human B vs A 0.3372 0.3694 +0.0322
Olsen_Exploris_3P human D vs C 0.1096 0.1181 +0.0085
Olsen_Exploris_3P human F vs E 0.3024 0.3240 +0.0216
Olsen_Exploris_3P yeast B vs A 0.6189 0.6425 +0.0236
Olsen_Exploris_3P yeast D vs C 0.1498 0.1686 +0.0188
Olsen_Exploris_3P yeast F vs E 1.0859 1.0787 -0.0072
SCIEX_3P ecoli B vs A 0.5007 0.4905 -0.0102
SCIEX_3P ecoli C vs A 0.5855 0.5767 -0.0088
SCIEX_3P ecoli C vs B 0.1466 0.1652 +0.0186
SCIEX_3P human B vs A 0.1942 0.2196 +0.0254
SCIEX_3P human C vs A 0.2171 0.2446 +0.0276
SCIEX_3P human C vs B 0.1705 0.1937 +0.0231
SCIEX_3P yeast B vs A 0.2341 0.2508 +0.0166
SCIEX_3P yeast C vs A 0.5719 0.5691 -0.0028
SCIEX_3P yeast C vs B 0.4881 0.5289 +0.0408

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1317 +0.0022
MTAC_3P_Alternating human A vs B 0.0731 0.0736 +0.0005
MTAC_3P_Alternating yeast A vs B 0.1300 0.1157 -0.0143
MTAC_3P_Standard ecoli A vs B 0.1320 0.1269 0.1215 -0.0051 -0.0054
MTAC_3P_Standard human A vs B 0.0679 0.0676 0.0651 -0.0003 -0.0025
MTAC_3P_Standard yeast A vs B 0.1262 0.1293 0.1272 +0.0031 -0.0021
Olsen_Astral_3P ecoli B vs A 0.1924 0.1962 +0.0038
Olsen_Astral_3P ecoli D vs C 0.1089 0.1127 +0.0038
Olsen_Astral_3P ecoli F vs E 0.3405 0.3702 +0.0297
Olsen_Astral_3P human B vs A 0.0420 0.0418 -0.0002
Olsen_Astral_3P human D vs C 0.0549 0.0617 +0.0068
Olsen_Astral_3P human F vs E 0.0528 0.0527 -0.0002
Olsen_Astral_3P yeast B vs A 0.0563 0.0495 -0.0068
Olsen_Astral_3P yeast D vs C 0.0483 0.0508 +0.0026
Olsen_Astral_3P yeast F vs E 0.0959 0.1075 +0.0116
Olsen_Exploris_3P ecoli B vs A 0.2033 0.2648 +0.0614
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0455 -0.0181
Olsen_Exploris_3P ecoli F vs E 0.4584 0.4731 +0.0147
Olsen_Exploris_3P human B vs A 0.0646 0.0735 +0.0089
Olsen_Exploris_3P human D vs C 0.0301 0.0312 +0.0012
Olsen_Exploris_3P human F vs E 0.0759 0.0848 +0.0089
Olsen_Exploris_3P yeast B vs A 0.2336 0.2434 +0.0098
Olsen_Exploris_3P yeast D vs C 0.0715 0.0935 +0.0220
Olsen_Exploris_3P yeast F vs E 0.5309 0.4381 -0.0928
SCIEX_3P ecoli B vs A 0.2191 0.2018 -0.0173
SCIEX_3P ecoli C vs A 0.2647 0.2310 -0.0337
SCIEX_3P ecoli C vs B 0.0574 0.0744 +0.0170
SCIEX_3P human B vs A 0.0657 0.0731 +0.0074
SCIEX_3P human C vs A 0.0731 0.0813 +0.0082
SCIEX_3P human C vs B 0.0556 0.0685 +0.0129
SCIEX_3P yeast B vs A 0.1098 0.0860 -0.0238
SCIEX_3P yeast C vs A 0.2938 0.2690 -0.0247
SCIEX_3P yeast C vs B 0.2531 0.2669 +0.0138

Metric: runtime

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 247.2300 528.7400
KEAP1KO_Eclipse 24.0700 43
MTAC_3P_Alternating 12.7500 35.3300
MTAC_3P_Standard 12.3100 216.0300 9.9900 -2.3200 -206.0400 -18.8465% -95.3756%
MTAC_Yeast_Alternating_3min 97.2100
MTAC_Yeast_Alternating_5min 5.3800 11.7900
MTAC_Yeast_Standard_3min 5.4300 81.7200
MTAC_Yeast_Standard_5min 5.5500 19.4900
Olsen_Astral_3P 76.4000 169.8700
Olsen_Exploris_3P 27.6600 54.9900
SCIEX_3P 30.2900 69.8500
SCP_Astral_1000pg_12ms 5.7900 15.1900
SCP_Astral_1000pg_24ms 6.2600 11.9700
SCP_Astral_1000pg_3ms 4.5200 196.5000
SCP_Astral_1000pg_6ms 5.7400 11.4700
SCP_Astral_10ng_12ms 7.0700 14.3000
SCP_Astral_10ng_24ms 7.5900 14.9200
SCP_Astral_10ng_6ms 7.3800 12.4600
SCP_Astral_10ng_ms 6.4500 10.7600
SCP_Astral_250pg_12ms 4.7400 11.7200
SCP_Astral_250pg_24ms 5.2600 7.8500
SCP_Astral_250pg_3ms 4.6500
SCP_Astral_250pg_6ms 4.1700 10.9200
SCP_Astral_500pg_12ms 5.2800 11.4700
SCP_Astral_500pg_24ms 5.5100 9.7200
SCP_Astral_500pg_3ms 4.7300 8.0500
SCP_Astral_500pg_6ms 4.6500 10.4100
SCP_Astral_MBR 9.0400 12.7700
Seer_Astral_45 100.3500 154.0300
Seer_Astral_single 13.6800
YEAST_KO_Astral 235.6300 456.7200
EWZ_2P_MBR_Exploris 29 53.7200
EWZ_2P_noMBR_Exploris 27.1100 52.4300

MTAC_3P_Standard_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png