Regression Metrics Report

Versions: v0.6.4, v0.6.6, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 5499336 7770128 7834374
KEAP1KO_Eclipse 1096494 1311411 1311411 1311904 +215410 +493 +493 +19.6453% +0.0376% +0.0376%
MTAC_3P_Alternating 586322 616475 616475 515094 -71228 -101381 -101381 -12.1483% -16.4453% -16.4453%
MTAC_3P_Standard 596590 623500 623500 519061 -77529 -104439 -104439 -12.9954% -16.7504% -16.7504%
MTAC_Yeast_Alternating_3min 137143 137143 122728 -14415 -14415 -10.5109% -10.5109%
MTAC_Yeast_Alternating_5min 155641 156733 156562 142035 -13606 -14698 -14527 -8.7419% -9.3777% -9.2788%
MTAC_Yeast_Standard_3min 138509 139777 139662 125735 -12774 -14042 -13927 -9.2225% -10.0460% -9.9719%
MTAC_Yeast_Standard_5min 158962 158983 158983 143833 -15129 -15150 -15150 -9.5174% -9.5293% -9.5293%
Olsen_Astral_3P 3282083 3760070 3760070
Olsen_Exploris_3P 1022736 1155533 1155533 998851 -23885 -156682 -156682 -2.3354% -13.5593% -13.5593%
SCIEX_3P 672242 749418 749418
SCP_Astral_1000pg_12ms 40882 41855 41855 26691 -14191 -15164 -15164 -34.7121% -36.2298% -36.2298%
SCP_Astral_1000pg_24ms 41069 42339 42344 22989 -18080 -19350 -19355 -44.0235% -45.7025% -45.7090%
SCP_Astral_1000pg_3ms 8740 23115 23115 20436 +11696 -2679 -2679 +133.8215% -11.5899% -11.5899%
SCP_Astral_1000pg_6ms 16935 17553 17553 16283 -652 -1270 -1270 -3.8500% -7.2352% -7.2352%
SCP_Astral_10ng_12ms 99908 102934 102934 74068 -25840 -28866 -28866 -25.8638% -28.0432% -28.0432%
SCP_Astral_10ng_24ms 71098 72525 72805 47665 -23433 -24860 -25140 -32.9587% -34.2778% -34.5306%
SCP_Astral_10ng_6ms 115157 117282 117413 88358 -26799 -28924 -29055 -23.2717% -24.6619% -24.7460%
SCP_Astral_10ng_ms 105704 106497 106497 87231 -18473 -19266 -19266 -17.4762% -18.0907% -18.0907%
SCP_Astral_250pg_12ms 10194 10806 10806 8101 -2093 -2705 -2705 -20.5317% -25.0324% -25.0324%
SCP_Astral_250pg_24ms 14807 15433 15433 7880 -6927 -7553 -7553 -46.7819% -48.9406% -48.9406%
SCP_Astral_250pg_3ms 1261 2032 2032 2278 +1017 +246 +246 +80.6503% +12.1063% +12.1063%
SCP_Astral_250pg_6ms 1436 4783 4783 5328 +3892 +545 +545 +271.0306% +11.3945% +11.3945%
SCP_Astral_500pg_12ms 21710 21895 21895 14502 -7208 -7393 -7393 -33.2013% -33.7657% -33.7657%
SCP_Astral_500pg_24ms 25860 26143 26143 13762 -12098 -12381 -12381 -46.7827% -47.3588% -47.3588%
SCP_Astral_500pg_3ms 3484 6600 +3116 +89.4374%
SCP_Astral_500pg_6ms 10699 11474 11474 11779 +1080 +305 +305 +10.0944% +2.6582% +2.6582%
SCP_Astral_MBR 92167 93648 93648 71362 -20805 -22286 -22286 -22.5732% -23.7976% -23.7976%
Seer_Astral_45 2512737 3122633 3122633
Seer_Astral_single 56522 56522 47263 -9259 -9259 -16.3812% -16.3812%
YEAST_KO_Astral 16088274 20363242 20387044
EWZ_2P_MBR_Exploris 1662994 1805248 1805248 1660958 -2036 -144290 -144290 -0.1224% -7.9928% -7.9928%
EWZ_2P_noMBR_Exploris 1608906 1770759 1770759 1661034 +52128 -109725 -109725 +3.2400% -6.1965% -6.1965%

Metric: identification.precursors.unique

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 246168 430621 431564
KEAP1KO_Eclipse 111504 133648 133648 113124 +1620 -20524 -20524 +1.4529% -15.3568% -15.3568%
MTAC_3P_Alternating 108267 117420 117420 87242 -21025 -30178 -30178 -19.4196% -25.7009% -25.7009%
MTAC_3P_Standard 110265 118733 118733 87892 -22373 -30841 -30841 -20.2902% -25.9751% -25.9751%
MTAC_Yeast_Alternating_3min 48709 48709 41477 -7232 -7232 -14.8474% -14.8474%
MTAC_Yeast_Alternating_5min 53969 55370 55197 47999 -5970 -7371 -7198 -11.0619% -13.3123% -13.0406%
MTAC_Yeast_Standard_3min 48621 50039 49836 42577 -6044 -7462 -7259 -12.4308% -14.9124% -14.5658%
MTAC_Yeast_Standard_5min 55060 56122 56122 48595 -6465 -7527 -7527 -11.7417% -13.4119% -13.4119%
Olsen_Astral_3P 198770 231187 231187
Olsen_Exploris_3P 51272 58902 58902 44996 -6276 -13906 -13906 -12.2406% -23.6087% -23.6087%
SCIEX_3P 82206 93832 93832
SCP_Astral_1000pg_12ms 14440 15016 15016 8995 -5445 -6021 -6021 -37.7078% -40.0972% -40.0972%
SCP_Astral_1000pg_24ms 14483 15025 15026 7734 -6749 -7291 -7292 -46.5995% -48.5258% -48.5292%
SCP_Astral_1000pg_3ms 8740 9376 9376 7925 -815 -1451 -1451 -9.3249% -15.4757% -15.4757%
SCP_Astral_1000pg_6ms 8898 9259 9259 8493 -405 -766 -766 -4.5516% -8.2730% -8.2730%
SCP_Astral_10ng_12ms 34865 36293 36293 24798 -10067 -11495 -11495 -28.8742% -31.6728% -31.6728%
SCP_Astral_10ng_24ms 24649 25391 25531 15977 -8672 -9414 -9554 -35.1820% -37.0761% -37.4212%
SCP_Astral_10ng_6ms 40156 41556 41511 29612 -10544 -11944 -11899 -26.2576% -28.7419% -28.6647%
SCP_Astral_10ng_ms 36688 37676 37676 29540 -7148 -8136 -8136 -19.4832% -21.5946% -21.5946%
SCP_Astral_250pg_12ms 3666 3949 3949 2848 -818 -1101 -1101 -22.3131% -27.8805% -27.8805%
SCP_Astral_250pg_24ms 5299 5611 5611 2657 -2642 -2954 -2954 -49.8585% -52.6466% -52.6466%
SCP_Astral_250pg_3ms 675 721 721 826 +151 +105 +105 +22.3704% +14.5631% +14.5631%
SCP_Astral_250pg_6ms 1436 1738 1738 1967 +531 +229 +229 +36.9777% +13.1761% +13.1761%
SCP_Astral_500pg_12ms 7794 7972 7972 4957 -2837 -3015 -3015 -36.3998% -37.8199% -37.8199%
SCP_Astral_500pg_24ms 9158 9342 9342 4639 -4519 -4703 -4703 -49.3448% -50.3425% -50.3425%
SCP_Astral_500pg_3ms 1846 2430 +584 +31.6360%
SCP_Astral_500pg_6ms 3874 4155 4155 4286 +412 +131 +131 +10.6350% +3.1528% +3.1528%
SCP_Astral_MBR 24110 25035 25035 16157 -7953 -8878 -8878 -32.9863% -35.4624% -35.4624%
Seer_Astral_45 69584 89971 89971
Seer_Astral_single 56522 56522 47263 -9259 -9259 -16.3812% -16.3812%
YEAST_KO_Astral 66823 87992 87947
EWZ_2P_MBR_Exploris 50700 56121 56121 46994 -3706 -9127 -9127 -7.3097% -16.2631% -16.2631%
EWZ_2P_noMBR_Exploris 50591 56321 56321 47001 -3590 -9320 -9320 -7.0961% -16.5480% -16.5480%

Metric: identification.protein_groups.total

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 603278 723191 726455
KEAP1KO_Eclipse 87920 92814 92814 95657 +7737 +2843 +2843 +8.8000% +3.0631% +3.0631%
MTAC_3P_Alternating 63773 64043 64043 60189 -3584 -3854 -3854 -5.6199% -6.0178% -6.0178%
MTAC_3P_Standard 64317 64591 64591 59862 -4455 -4729 -4729 -6.9266% -7.3215% -7.3215%
MTAC_Yeast_Alternating_3min 12100 12100 11620 -480 -480 -3.9669% -3.9669%
MTAC_Yeast_Alternating_5min 12432 12411 12413 12233 -199 -178 -180 -1.6007% -1.4342% -1.4501%
MTAC_Yeast_Standard_3min 12008 12020 12034 11623 -385 -397 -411 -3.2062% -3.3028% -3.4153%
MTAC_Yeast_Standard_5min 12561 12508 12508 12276 -285 -232 -232 -2.2689% -1.8548% -1.8548%
Olsen_Astral_3P 236395 245754 245754
Olsen_Exploris_3P 146224 153802 153802 147473 +1249 -6329 -6329 +0.8542% -4.1150% -4.1150%
SCIEX_3P 70810 74209 74209
SCP_Astral_1000pg_12ms 9163 9538 9538 7211 -1952 -2327 -2327 -21.3031% -24.3971% -24.3971%
SCP_Astral_1000pg_24ms 9298 9857 9852 6558 -2740 -3299 -3294 -29.4687% -33.4686% -33.4348%
SCP_Astral_1000pg_3ms 2450 6084 6084 5768 +3318 -316 -316 +135.4286% -5.1940% -5.1940%
SCP_Astral_1000pg_6ms 4703 4588 4588 4472 -231 -116 -116 -4.9118% -2.5283% -2.5283%
SCP_Astral_10ng_12ms 16190 16202 16202 14102 -2088 -2100 -2100 -12.8968% -12.9614% -12.9614%
SCP_Astral_10ng_24ms 13599 13792 13697 11261 -2338 -2531 -2436 -17.1924% -18.3512% -17.7849%
SCP_Astral_10ng_6ms 17017 17179 17127 15113 -1904 -2066 -2014 -11.1888% -12.0263% -11.7592%
SCP_Astral_10ng_ms 16252 16276 16276 14790 -1462 -1486 -1486 -8.9958% -9.1300% -9.1300%
SCP_Astral_250pg_12ms 3647 3913 3913 2966 -681 -947 -947 -18.6729% -24.2014% -24.2014%
SCP_Astral_250pg_24ms 4300 4603 4603 2792 -1508 -1811 -1811 -35.0698% -39.3439% -39.3439%
SCP_Astral_250pg_3ms 576 22 22 863 +287 +841 +841 +49.8264% +3822.7273% +3822.7273%
SCP_Astral_250pg_6ms 637 2080 2080 1765 +1128 -315 -315 +177.0801% -15.1442% -15.1442%
SCP_Astral_500pg_12ms 6245 6346 6346 4605 -1640 -1741 -1741 -26.2610% -27.4346% -27.4346%
SCP_Astral_500pg_24ms 6722 6729 6729 4483 -2239 -2246 -2246 -33.3085% -33.3779% -33.3779%
SCP_Astral_500pg_3ms 982 2059 +1077 +109.6741%
SCP_Astral_500pg_6ms 3708 4007 4007 3824 +116 -183 -183 +3.1284% -4.5670% -4.5670%
SCP_Astral_MBR 20165 20214 20214 18352 -1813 -1862 -1862 -8.9908% -9.2114% -9.2114%
Seer_Astral_45 225377 241502 241502
Seer_Astral_single 4662 4662 4322 -340 -340 -7.2930% -7.2930%
YEAST_KO_Astral 1300836 1388950 1386974
EWZ_2P_MBR_Exploris 239484 245804 245804 237917 -1567 -7887 -7887 -0.6543% -3.2087% -3.2087%
EWZ_2P_noMBR_Exploris 235990 245406 245406 237356 +1366 -8050 -8050 +0.5788% -3.2803% -3.2803%

Metric: identification.protein_groups.unique

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 21740 28560 28358
KEAP1KO_Eclipse 7845 8174 8174 7837 -8 -337 -337 -0.1020% -4.1228% -4.1228%
MTAC_3P_Alternating 11361 11494 11494 10352 -1009 -1142 -1142 -8.8813% -9.9356% -9.9356%
MTAC_3P_Standard 11473 11609 11609 10306 -1167 -1303 -1303 -10.1717% -11.2241% -11.2241%
MTAC_Yeast_Alternating_3min 4135 4135 3957 -178 -178 -4.3047% -4.3047%
MTAC_Yeast_Alternating_5min 4215 4229 4232 4159 -56 -70 -73 -1.3286% -1.6552% -1.7250%
MTAC_Yeast_Standard_3min 4075 4100 4113 3954 -121 -146 -159 -2.9693% -3.5610% -3.8658%
MTAC_Yeast_Standard_5min 4249 4249 4249 4158 -91 -91 -91 -2.1417% -2.1417% -2.1417%
Olsen_Astral_3P 13820 14399 14399
Olsen_Exploris_3P 7255 7623 7623 6695 -560 -928 -928 -7.7188% -12.1737% -12.1737%
SCIEX_3P 8652 9081 9081
SCP_Astral_1000pg_12ms 3245 3397 3397 2447 -798 -950 -950 -24.5917% -27.9659% -27.9659%
SCP_Astral_1000pg_24ms 3254 3466 3469 2216 -1038 -1250 -1253 -31.8992% -36.0646% -36.1199%
SCP_Astral_1000pg_3ms 2450 2396 2396 2216 -234 -180 -180 -9.5510% -7.5125% -7.5125%
SCP_Astral_1000pg_6ms 2508 2436 2436 2339 -169 -97 -97 -6.7384% -3.9819% -3.9819%
SCP_Astral_10ng_12ms 5579 5627 5627 4747 -832 -880 -880 -14.9131% -15.6389% -15.6389%
SCP_Astral_10ng_24ms 4721 4803 4754 3807 -914 -996 -947 -19.3603% -20.7370% -19.9201%
SCP_Astral_10ng_6ms 5846 5950 5930 5123 -723 -827 -807 -12.3674% -13.8992% -13.6088%
SCP_Astral_10ng_ms 5611 5655 5655 5015 -596 -640 -640 -10.6220% -11.3174% -11.3174%
SCP_Astral_250pg_12ms 1292 1424 1424 1037 -255 -387 -387 -19.7368% -27.1770% -27.1770%
SCP_Astral_250pg_24ms 1568 1660 1660 952 -616 -708 -708 -39.2857% -42.6506% -42.6506%
SCP_Astral_250pg_3ms 307 8 8 306 -1 +298 +298 -0.3257% +3725% +3725%
SCP_Astral_250pg_6ms 637 756 756 638 +1 -118 -118 +0.1570% -15.6085% -15.6085%
SCP_Astral_500pg_12ms 2207 2275 2275 1599 -608 -676 -676 -27.5487% -29.7143% -29.7143%
SCP_Astral_500pg_24ms 2403 2388 2388 1523 -880 -865 -865 -36.6209% -36.2228% -36.2228%
SCP_Astral_500pg_3ms 525 775 +250 +47.6190%
SCP_Astral_500pg_6ms 1318 1447 1447 1396 +78 -51 -51 +5.9181% -3.5245% -3.5245%
SCP_Astral_MBR 4708 4754 4754 3864 -844 -890 -890 -17.9269% -18.7211% -18.7211%
Seer_Astral_45 5802 6299 6299
Seer_Astral_single 4662 4662 4322 -340 -340 -7.2930% -7.2930%
YEAST_KO_Astral 4565 4793 4786
EWZ_2P_MBR_Exploris 6831 7038 7038 6484 -347 -554 -554 -5.0798% -7.8716% -7.8716%
EWZ_2P_noMBR_Exploris 6858 7115 7115 6487 -371 -628 -628 -5.4097% -8.8264% -8.8264%

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0006 -0.0003 -0.0003 -0.0007 -0.0001 -0.0004 -0.0004
MTAC_3P_Alternating_Entrapment -0.0005 -0.0001 -0.0001 -0.0011 -0.0006 -0.0010 -0.0010
MTAC_3P_Standard_Entrapment -0.0014 0.0002 0.0002 -0.0016 -0.0003 -0.0018 -0.0018
MTAC_Yeast_Alternating_3min_Entrapment -0.0020 -0.0020 -0.0028 -0.0008 -0.0008
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0013 -0.0013 -0.0015 -0.0011 -0.0003 -0.0003
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0013 -0.0013 -0.0017 +0.0002 -0.0004 -0.0004
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0020 -0.0025 -0.0015 -0.0006
Olsen_Astral_3P_Entrapment -0.0015 -0.0011
Olsen_Exploris_3P_Entrapment -0.0002 0.0002 -0.0009 -0.0007 -0.0011
SCIEX_3P_Entrapment -0.0005 -0.0001
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0016 -0.0054 -0.0031 -0.0038
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0033 -0.0004 +0.0050 +0.0029
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0037 -0.0037 -0.0054 -0.0024 -0.0017 -0.0017
SCP_Astral_1000pg_6ms_Entrapment -0.0002 -0.0011 -0.0011 -0.0023 -0.0021 -0.0012 -0.0012
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0023 -0.0023 -0.0022 +0.0000 +0.0001 +0.0001
SCP_Astral_10ng_24ms_Entrapment -0.0020 0.0009 -0.0027 -0.0007 -0.0036
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0027 -0.0036 -0.0011 -0.0009
SCP_Astral_10ng_6ms_Entrapment -0.0008 -0.0003 -0.0022 -0.0015 -0.0020
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0040 -0.0016 +0.0023 +0.0025
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0012 -0.0057 -0.0054 -0.0045
SCP_Astral_250pg_6ms_Entrapment -0.0051 -0.0056 -0.0005
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0020 -0.0020 -0.0053 -0.0032 -0.0034 -0.0034
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0031 0.0009 +0.0022 +0.0041
SCP_Astral_500pg_3ms_Entrapment -0.0013 -0.0013 +0.0000
SCP_Astral_500pg_6ms_Entrapment -0.0031 -0.0031 -0.0064 -0.0033 -0.0033
SCP_Astral_MBR_Entrapment -0.0026 -0.0017 -0.0023 +0.0003 -0.0006
YEAST_KO_Astral_Entrapment -0.0024 -0.0025 -0.0025

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0010 -0.0031 -0.0031 -0.0017 -0.0007 +0.0015 +0.0015
MTAC_3P_Alternating_Entrapment -0.0010 -0.0006 -0.0006 -0.0029 -0.0019 -0.0023 -0.0023
MTAC_3P_Standard_Entrapment -0.0013 -0.0022 -0.0022 -0.0038 -0.0025 -0.0015 -0.0015
MTAC_Yeast_Alternating_3min_Entrapment -0.0050 -0.0050 -0.0038 +0.0012 +0.0012
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0038 -0.0038 -0.0012 +0.0029 +0.0026 +0.0026
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0050 -0.0050 -0.0054 +0.0005 -0.0004 -0.0004
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0045 -0.0056 -0.0020 -0.0011
Olsen_Astral_3P_Entrapment -0.0041 -0.0034
Olsen_Exploris_3P_Entrapment -0.0029 0.0002 -0.0036 -0.0007 -0.0039
SCIEX_3P_Entrapment -0.0031 -0.0032
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0046 -0.0078 -0.0029 -0.0033
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0058 -0.0060 +0.0010 -0.0001
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0036 -0.0036 -0.0074 -0.0015 -0.0038 -0.0038
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0049 -0.0049 -0.0012 +0.0006 +0.0037 +0.0037
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0049 -0.0049 -0.0056 -0.0002 -0.0007 -0.0007
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0023 -0.0030 +0.0003 -0.0007
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0073 -0.0059 -0.0023 +0.0014
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0023 -0.0029 +0.0026 -0.0005
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0076 -0.0066 -0.0013 +0.0011
SCP_Astral_250pg_24ms_Entrapment -0.0042 -0.0042 -0.0002 +0.0040 +0.0040
SCP_Astral_250pg_3ms_Entrapment -0.0028 0 0
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0067 -0.0067 -0.0085 +0.0013 -0.0019 -0.0019
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0054 -0.0054 -0.0065 -0.0030 -0.0011 -0.0011
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0008 0.0033 +0.0053 +0.0041
SCP_Astral_500pg_3ms_Entrapment -0.0042 0.0071 -0.0097 -0.0056 -0.0168
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0045 -0.0045 -0.0050 -0.0006 -0.0005 -0.0005
SCP_Astral_MBR_Entrapment -0.0059 -0.0019 -0.0012 +0.0047 +0.0006
YEAST_KO_Astral_Entrapment -0.0065 -0.0049 -0.0049

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0005 -0.0004 -0.0004 0.0001 +0.0006 +0.0005 +0.0005
MTAC_3P_Alternating_Entrapment -0.0001 0.0003 0.0003 -0.0007 -0.0006 -0.0010 -0.0010
MTAC_3P_Standard_Entrapment -0.0009 0.0001 0.0001 -0.0012 -0.0003 -0.0013 -0.0013
MTAC_Yeast_Alternating_3min_Entrapment -0.0013 -0.0013 -0.0021 -0.0008 -0.0008
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0008 -0.0008 -0.0012 -0.0008 -0.0004 -0.0004
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0007 -0.0007 -0.0018 -0.0010 -0.0011 -0.0011
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0010 -0.0021 -0.0013 -0.0011
Olsen_Astral_3P_Entrapment -0.0008 -0.0004
Olsen_Exploris_3P_Entrapment -0.0004 0.0005 -0.0012 -0.0007 -0.0016
SCIEX_3P_Entrapment -0.0005 -0.0001
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0013 -0.0050 -0.0035 -0.0037
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0028 -0.0005 +0.0041 +0.0023
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0022 -0.0022 -0.0047 -0.0027 -0.0025 -0.0025
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0006 -0.0006 -0.0016 -0.0018 -0.0010 -0.0010
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0012 -0.0012 -0.0025 -0.0008 -0.0012 -0.0012
SCP_Astral_10ng_24ms_Entrapment -0.0014 0.0004 -0.0022 -0.0009 -0.0026
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0020 -0.0030 -0.0011 -0.0011
SCP_Astral_10ng_6ms_Entrapment -0.0005 0.0002 -0.0019 -0.0014 -0.0021
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0027 -0.0021 +0.0009 +0.0006
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0008 -0.0046 -0.0039 -0.0038
SCP_Astral_250pg_6ms_Entrapment -0.0037 -0.0064 -0.0027
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0012 -0.0012 -0.0046 -0.0027 -0.0034 -0.0034
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0021 0.0018 +0.0034 +0.0038
SCP_Astral_500pg_3ms_Entrapment 0.0019 -0.0018 -0.0037
SCP_Astral_500pg_6ms_Entrapment -0.0025 -0.0025 -0.0044 -0.0018 -0.0018
SCP_Astral_MBR_Entrapment -0.0017 -0.0015 -0.0020 -0.0003 -0.0005
YEAST_KO_Astral_Entrapment -0.0013 -0.0006 -0.0006

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0002 -0.0019 -0.0019 -0.0017 -0.0015 +0.0002 +0.0002
MTAC_3P_Alternating_Entrapment -0.0001 0.0001 0.0001 -0.0020 -0.0019 -0.0021 -0.0021
MTAC_3P_Standard_Entrapment -0.0008 -0.0012 -0.0012 -0.0025 -0.0017 -0.0013 -0.0013
MTAC_Yeast_Alternating_3min_Entrapment -0.0030 -0.0030 -0.0022 +0.0008 +0.0008
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0021 -0.0021 -0.0015 +0.0022 +0.0006 +0.0006
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0032 -0.0032 -0.0037 +0.0001 -0.0006 -0.0006
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0027 -0.0038 -0.0015 -0.0011
Olsen_Astral_3P_Entrapment -0.0024 -0.0024
Olsen_Exploris_3P_Entrapment -0.0026 0.0005 -0.0028 -0.0002 -0.0033
SCIEX_3P_Entrapment -0.0036 -0.0031
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0032 -0.0049 -0.0012 -0.0017
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0056 -0.0037 +0.0012 +0.0019
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0016 -0.0016 -0.0052 -0.0008 -0.0036 -0.0036
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0035 -0.0035 -0.0007 +0.0018 +0.0028 +0.0028
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0032 -0.0032 -0.0045 +0.0002 -0.0013 -0.0013
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0014 -0.0016 +0.0016 -0.0003
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0046 -0.0037 -0.0016 +0.0009
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0030 -0.0031 +0.0008 -0.0001
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0041 -0.0062 -0.0024 -0.0021
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0032 -0.0016 -0.0002 +0.0016
SCP_Astral_250pg_3ms_Entrapment -0.0060 -0.0082 -0.0082
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0068 -0.0068 -0.0072 +0.0028 -0.0003 -0.0003
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0040 -0.0040 -0.0050 -0.0010 -0.0010 -0.0010
SCP_Astral_500pg_24ms_Entrapment -0.0019 -0.0001 0.0034 +0.0053 +0.0034
SCP_Astral_500pg_3ms_Entrapment -0.0032 0.0066 -0.0058 -0.0026 -0.0125
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0022 -0.0022 -0.0035 -0.0015 -0.0013 -0.0013
SCP_Astral_MBR_Entrapment -0.0024 -0.0015 -0.0011 +0.0013 +0.0004
YEAST_KO_Astral_Entrapment -0.0041 -0.0029 -0.0029

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131 0.0067 0.0067 0 -0.0131 -0.0067 -0.0067

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476 0.4086 0.4086 0.6765 +0.6289 +0.2679 +0.2679

keap1.precursors

Dataset Gene Run v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1 1 3 +1 +0 +2
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1 1 5 +1 +0 +4
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 0 6 +0 +0 +6
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 13 13 10 +4 +0 -3
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 13 13 10 +4 +0 -3
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 13 13 10 +3 +0 -3
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1 1 0 +0 +0 -1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1 1 0 +0 +0 -1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1 1 0 +0 +0 -1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 +0 +0 +0

keap1.protein_groups

Dataset Gene Run v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 0 0 1 +0 +0 +1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 0 0 1 +0 +0 +1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 0 1 +0 +0 +1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1 1 1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1 1 1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1 1 1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 +0 +0 +0

Metric: cv.precursors.median_cv

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1423 0.1423 0.1429 -0.0030 +0.0006 +0.0006
MTAC_3P_Standard 0.1393 0.1363 0.1363 0.1361 -0.0032 -0.0002 -0.0002
MTAC_Yeast_Alternating_3min 0.1456 0.1456 0.1449 -0.0007 -0.0007
MTAC_Yeast_Alternating_5min 0.1531 0.1402 0.1404 0.1393 -0.0138 -0.0009 -0.0011
MTAC_Yeast_Standard_3min 0.1698 0.1644 0.1641 0.1642 -0.0056 -0.0002 +0.0001
MTAC_Yeast_Standard_5min 0.1503 0.1369 0.1369 0.1350 -0.0153 -0.0018 -0.0018
Olsen_Astral_3P 0.0823 0.0884 0.0884
Olsen_Exploris_3P 0.1480 0.1500 0.1500 0.1515 +0.0035 +0.0015 +0.0015
SCIEX_3P 0.1284 0.1281 0.1281

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0738 0.0738 0.0783 +0.0020 +0.0045 +0.0045
MTAC_3P_Standard 0.0723 0.0704 0.0704 0.0721 -0.0002 +0.0017 +0.0017
MTAC_Yeast_Alternating_3min 0.0670 0.0670 0.0683 +0.0012 +0.0012
MTAC_Yeast_Alternating_5min 0.0778 0.0596 0.0598 0.0619 -0.0159 +0.0023 +0.0021
MTAC_Yeast_Standard_3min 0.0792 0.0772 0.0772 0.0771 -0.0021 -0.0001 -0.0000
MTAC_Yeast_Standard_5min 0.0770 0.0567 0.0567 0.0583 -0.0188 +0.0016 +0.0016
Olsen_Astral_3P 0.0374 0.0373 0.0373
Olsen_Exploris_3P 0.1028 0.1020 0.1020 0.1061 +0.0033 +0.0041 +0.0041
SCIEX_3P 0.0864 0.0834 0.0834

fold_change.error.precursors

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0690 -0.0690 -0.0347 -0.0024 +0 -0.0343
MTAC_3P_Alternating human A vs B -0.0432 -0.0352 -0.0352 -0.0381 -0.0079 +0 +0.0028
MTAC_3P_Alternating yeast A vs B -0.0026 0.0043 0.0043 -0.0337 +0.0017 +0 +0.0294
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1260 -0.1260 -0.0845 +0.0015 +0 -0.0415
MTAC_3P_Standard human A vs B -0.0785 -0.0730 -0.0730 -0.0716 -0.0055 +0 -0.0014
MTAC_3P_Standard yeast A vs B -0.0337 -0.0254 -0.0254 -0.0585 -0.0083 +0 +0.0331
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0684 -0.0684 +0.0114 +0
Olsen_Astral_3P ecoli D vs C -0.2013 -0.2131 -0.2131 +0.0117 +0
Olsen_Astral_3P ecoli F vs E 0.0193 -0.0124 -0.0124 -0.0069 +0
Olsen_Astral_3P human B vs A -0.0036 -0.0104 -0.0104 +0.0067 +0
Olsen_Astral_3P human D vs C -0.3258 -0.3340 -0.3340 +0.0083 +0
Olsen_Astral_3P human F vs E 0.0777 0.0752 0.0752 -0.0025 +0
Olsen_Astral_3P yeast B vs A 0.0756 0.0863 0.0863 +0.0108 +0
Olsen_Astral_3P yeast D vs C -0.2263 -0.2274 -0.2274 +0.0011 +0
Olsen_Astral_3P yeast F vs E 0.1940 0.2202 0.2202 +0.0262 +0
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2234 0.2234 0.2244 -0.0038 +0 +0.0010
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0755 -0.0755 -0.0758 +0.0068 +0 +0.0003
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2741 0.2741 0.2452 +0.0186 +0 -0.0289
Olsen_Exploris_3P human B vs A 0.0955 0.1004 0.1004 0.0914 +0.0049 +0 -0.0090
Olsen_Exploris_3P human D vs C -0.0535 -0.0539 -0.0539 -0.0508 +0.0004 +0 -0.0031
Olsen_Exploris_3P human F vs E 0.1998 0.2053 0.2053 0.2038 +0.0054 +0 -0.0015
Olsen_Exploris_3P yeast B vs A 0.0478 0.0464 0.0464 0.0286 -0.0014 +0 -0.0179
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1118 -0.1118 -0.1045 +0.0042 +0 -0.0073
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0906 -0.0906 -0.0443 +0.0227 +0 -0.0463
SCIEX_3P ecoli B vs A -0.0531 -0.0718 -0.0718 +0.0187 +0
SCIEX_3P ecoli C vs A -0.0580 -0.0539 -0.0539 -0.0042 +0
SCIEX_3P ecoli C vs B -0.0146 0.0095 0.0095 -0.0050 +0
SCIEX_3P human B vs A -0.0334 -0.0452 -0.0452 +0.0117 +0
SCIEX_3P human C vs A -0.0804 -0.0564 -0.0564 -0.0241 +0
SCIEX_3P human C vs B -0.0484 -0.0152 -0.0152 -0.0332 +0
SCIEX_3P yeast B vs A -0.0084 -0.0194 -0.0194 +0.0110 +0
SCIEX_3P yeast C vs A -0.1064 -0.0712 -0.0712 -0.0352 +0
SCIEX_3P yeast C vs B -0.0912 -0.0433 -0.0433 -0.0479 +0

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0665 -0.0665 -0.0181 +0.0011 +0 -0.0484
MTAC_3P_Alternating human A vs B -0.0451 -0.0368 -0.0368 -0.0403 -0.0083 +0 +0.0035
MTAC_3P_Alternating yeast A vs B 0.0016 0.0064 0.0064 -0.0369 +0.0048 +0 +0.0305
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1245 -0.1245 -0.0741 +0.0000 +0 -0.0503
MTAC_3P_Standard human A vs B -0.0772 -0.0708 -0.0708 -0.0720 -0.0064 +0 +0.0012
MTAC_3P_Standard yeast A vs B -0.0322 -0.0248 -0.0248 -0.0680 -0.0075 +0 +0.0433
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0651 -0.0651 +0.0198 +0
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1660 -0.1660 +0.0046 +0
Olsen_Astral_3P ecoli F vs E 0.0601 0.0256 0.0256 -0.0344 +0
Olsen_Astral_3P human B vs A -0.0149 -0.0219 -0.0219 +0.0070 +0
Olsen_Astral_3P human D vs C -0.2928 -0.3003 -0.3003 +0.0075 +0
Olsen_Astral_3P human F vs E 0.0700 0.0700 0.0700 -0.0001 +0
Olsen_Astral_3P yeast B vs A 0.0543 0.0660 0.0660 +0.0118 +0
Olsen_Astral_3P yeast D vs C -0.1994 -0.1997 -0.1997 +0.0003 +0
Olsen_Astral_3P yeast F vs E 0.1690 0.1963 0.1963 +0.0273 +0
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2133 0.2133 0.2282 -0.0039 +0 +0.0150
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0743 -0.0743 -0.0622 +0.0080 +0 -0.0121
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3042 0.3042 0.2788 +0.0484 +0 -0.0254
Olsen_Exploris_3P human B vs A 0.0841 0.0878 0.0878 0.0827 +0.0037 +0 -0.0051
Olsen_Exploris_3P human D vs C -0.0502 -0.0508 -0.0508 -0.0466 +0.0006 +0 -0.0042
Olsen_Exploris_3P human F vs E 0.1988 0.2026 0.2026 0.2048 +0.0038 +0 +0.0022
Olsen_Exploris_3P yeast B vs A 0.0433 0.0386 0.0386 0.0021 -0.0047 +0 -0.0365
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1163 -0.1163 -0.1184 +0.0068 +0 +0.0022
Olsen_Exploris_3P yeast F vs E -0.0534 -0.1043 -0.1043 -0.0965 +0.0509 +0 -0.0079
SCIEX_3P ecoli B vs A -0.0415 -0.0613 -0.0613 +0.0198 +0
SCIEX_3P ecoli C vs A -0.0531 -0.0459 -0.0459 -0.0072 +0
SCIEX_3P ecoli C vs B -0.0149 0.0153 0.0153 +0.0003 +0
SCIEX_3P human B vs A -0.0318 -0.0450 -0.0450 +0.0132 +0
SCIEX_3P human C vs A -0.0819 -0.0580 -0.0580 -0.0239 +0
SCIEX_3P human C vs B -0.0489 -0.0140 -0.0140 -0.0349 +0
SCIEX_3P yeast B vs A -0.0091 -0.0233 -0.0233 +0.0141 +0
SCIEX_3P yeast C vs A -0.1151 -0.0731 -0.0731 -0.0420 +0
SCIEX_3P yeast C vs B -0.1020 -0.0500 -0.0500 -0.0520 +0

fold_change.variance.precursors

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.2986 0.2986 0.2892 +0.0367 +0 -0.0095
MTAC_3P_Alternating human A vs B 0.1984 0.2126 0.2126 0.1613 +0.0142 +0 -0.0513
MTAC_3P_Alternating yeast A vs B 0.2558 0.2707 0.2707 0.2196 +0.0148 +0 -0.0510
MTAC_3P_Standard ecoli A vs B 0.2681 0.3085 0.3085 0.2798 +0.0404 +0 -0.0287
MTAC_3P_Standard human A vs B 0.2062 0.2230 0.2230 0.1662 +0.0168 +0 -0.0568
MTAC_3P_Standard yeast A vs B 0.2555 0.2741 0.2741 0.2247 +0.0186 +0 -0.0494
Olsen_Astral_3P ecoli B vs A 0.5438 0.5988 0.5988 +0.0550 +0
Olsen_Astral_3P ecoli D vs C 0.3566 0.3951 0.3951 +0.0384 +0
Olsen_Astral_3P ecoli F vs E 1.1682 1.3605 1.3605 +0.1923 +0
Olsen_Astral_3P human B vs A 0.2100 0.2539 0.2539 +0.0439 +0
Olsen_Astral_3P human D vs C 0.2930 0.3416 0.3416 +0.0486 +0
Olsen_Astral_3P human F vs E 0.3046 0.3584 0.3584 +0.0538 +0
Olsen_Astral_3P yeast B vs A 0.2937 0.3308 0.3308 +0.0371 +0
Olsen_Astral_3P yeast D vs C 0.2553 0.2849 0.2849 +0.0296 +0
Olsen_Astral_3P yeast F vs E 0.4774 0.5563 0.5563 +0.0788 +0
Olsen_Exploris_3P ecoli B vs A 0.5783 0.6122 0.6122 0.7742 +0.0339 +0 +0.1620
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1567 0.1567 0.1699 -0.0061 +0 +0.0131
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8085 0.8085 1.3912 +0.0041 +0 +0.5828
Olsen_Exploris_3P human B vs A 0.3372 0.3388 0.3388 0.3629 +0.0015 +0 +0.0242
Olsen_Exploris_3P human D vs C 0.1096 0.1750 0.1750 0.1780 +0.0655 +0 +0.0030
Olsen_Exploris_3P human F vs E 0.3024 0.3305 0.3305 0.3407 +0.0280 +0 +0.0103
Olsen_Exploris_3P yeast B vs A 0.6189 0.5961 0.5961 0.7668 -0.0228 +0 +0.1707
Olsen_Exploris_3P yeast D vs C 0.1498 0.2462 0.2462 0.3251 +0.0964 +0 +0.0789
Olsen_Exploris_3P yeast F vs E 1.0859 1.1525 1.1525 1.5904 +0.0666 +0 +0.4379
SCIEX_3P ecoli B vs A 0.5007 0.5347 0.5347 +0.0340 +0
SCIEX_3P ecoli C vs A 0.5855 0.5991 0.5991 +0.0136 +0
SCIEX_3P ecoli C vs B 0.1466 0.1463 0.1463 -0.0003 +0
SCIEX_3P human B vs A 0.1942 0.2132 0.2132 +0.0190 +0
SCIEX_3P human C vs A 0.2171 0.2455 0.2455 +0.0284 +0
SCIEX_3P human C vs B 0.1705 0.1985 0.1985 +0.0280 +0
SCIEX_3P yeast B vs A 0.2341 0.2465 0.2465 +0.0124 +0
SCIEX_3P yeast C vs A 0.5719 0.6150 0.6150 +0.0431 +0
SCIEX_3P yeast C vs B 0.4881 0.5513 0.5513 +0.0632 +0

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1525 0.1525 0.1495 +0.0230 +0 -0.0030
MTAC_3P_Alternating human A vs B 0.0731 0.0757 0.0757 0.0870 +0.0026 +0 +0.0113
MTAC_3P_Alternating yeast A vs B 0.1300 0.1123 0.1123 0.1211 -0.0177 +0 +0.0089
MTAC_3P_Standard ecoli A vs B 0.1320 0.1244 0.1244 0.1442 -0.0076 +0 +0.0198
MTAC_3P_Standard human A vs B 0.0679 0.0706 0.0706 0.0768 +0.0026 +0 +0.0063
MTAC_3P_Standard yeast A vs B 0.1262 0.1294 0.1294 0.1442 +0.0033 +0 +0.0148
Olsen_Astral_3P ecoli B vs A 0.1924 0.2322 0.2322 +0.0399 +0
Olsen_Astral_3P ecoli D vs C 0.1089 0.1342 0.1342 +0.0252 +0
Olsen_Astral_3P ecoli F vs E 0.3405 0.4293 0.4293 +0.0889 +0
Olsen_Astral_3P human B vs A 0.0420 0.0445 0.0445 +0.0025 +0
Olsen_Astral_3P human D vs C 0.0549 0.0649 0.0649 +0.0100 +0
Olsen_Astral_3P human F vs E 0.0528 0.0597 0.0597 +0.0069 +0
Olsen_Astral_3P yeast B vs A 0.0563 0.0533 0.0533 -0.0030 +0
Olsen_Astral_3P yeast D vs C 0.0483 0.0505 0.0505 +0.0023 +0
Olsen_Astral_3P yeast F vs E 0.0959 0.1287 0.1287 +0.0328 +0
Olsen_Exploris_3P ecoli B vs A 0.2033 0.2490 0.2490 0.2642 +0.0457 +0 +0.0153
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0575 0.0575 0.0607 -0.0061 +0 +0.0031
Olsen_Exploris_3P ecoli F vs E 0.4584 0.4220 0.4220 0.5328 -0.0364 +0 +0.1109
Olsen_Exploris_3P human B vs A 0.0646 0.0587 0.0587 0.0721 -0.0059 +0 +0.0134
Olsen_Exploris_3P human D vs C 0.0301 0.0346 0.0346 0.0404 +0.0045 +0 +0.0058
Olsen_Exploris_3P human F vs E 0.0759 0.0741 0.0741 0.0991 -0.0018 +0 +0.0250
Olsen_Exploris_3P yeast B vs A 0.2336 0.2060 0.2060 0.3329 -0.0276 +0 +0.1269
Olsen_Exploris_3P yeast D vs C 0.0715 0.0758 0.0758 0.0812 +0.0043 +0 +0.0054
Olsen_Exploris_3P yeast F vs E 0.5309 0.4212 0.4212 0.6396 -0.1098 +0 +0.2184
SCIEX_3P ecoli B vs A 0.2191 0.3229 0.3229 +0.1039 +0
SCIEX_3P ecoli C vs A 0.2647 0.3082 0.3082 +0.0434 +0
SCIEX_3P ecoli C vs B 0.0574 0.0650 0.0650 +0.0076 +0
SCIEX_3P human B vs A 0.0657 0.0604 0.0604 -0.0052 +0
SCIEX_3P human C vs A 0.0731 0.0655 0.0655 -0.0076 +0
SCIEX_3P human C vs B 0.0556 0.0615 0.0615 +0.0059 +0
SCIEX_3P yeast B vs A 0.1098 0.0968 0.0968 -0.0129 +0
SCIEX_3P yeast C vs A 0.2938 0.3167 0.3167 +0.0229 +0
SCIEX_3P yeast C vs B 0.2531 0.2947 0.2947 +0.0416 +0

Metric: runtime

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 247.2300 244.2700 247.1600
KEAP1KO_Eclipse 24.0700 22.8000 19.6500 14.1900 -9.8800 -8.6100 -5.4600 -41.0469% -37.7632% -27.7863%
MTAC_3P_Alternating 12.7500 13.6800 8.5700 6.4500 -6.3000 -7.2300 -2.1200 -49.4118% -52.8509% -24.7375%
MTAC_3P_Standard 12.3100 13.0600 10.2700 6.5800 -5.7300 -6.4800 -3.6900 -46.5475% -49.6172% -35.9299%
MTAC_Yeast_Alternating_3min 5.4900 4.0600 4.1800 -1.3100 +0.1200 -23.8616% +2.9557%
MTAC_Yeast_Alternating_5min 5.3800 4.7200 4.1500 3.9700 -1.4100 -0.7500 -0.1800 -26.2082% -15.8898% -4.3373%
MTAC_Yeast_Standard_3min 5.4300 5.6500 4.0200 4.2700 -1.1600 -1.3800 +0.2500 -21.3628% -24.4248% +6.2189%
MTAC_Yeast_Standard_5min 5.5500 4.3000 4.2900 3.9700 -1.5800 -0.3300 -0.3200 -28.4685% -7.6744% -7.4592%
Olsen_Astral_3P 76.4000 66.2000 62.2200
Olsen_Exploris_3P 27.6600 23.7200 20.3200 13.0900 -14.5700 -10.6300 -7.2300 -52.6753% -44.8145% -35.5807%
SCIEX_3P 30.2900 33.2900 28.0700
SCP_Astral_1000pg_12ms 5.7900 5.9000 4.0100 -1.7800 -1.8900 -30.7427% -32.0339%
SCP_Astral_1000pg_24ms 6.2600 5.2000 4.4400
SCP_Astral_1000pg_3ms 4.5200 6.1100 3.7600 3.6700 -0.8500 -2.4400 -0.0900 -18.8053% -39.9345% -2.3936%
SCP_Astral_1000pg_6ms 5.7400 3.5300 3.5300 3.4700 -2.2700 -0.0600 -0.0600 -39.5470% -1.6997% -1.6997%
SCP_Astral_10ng_12ms 7.0700 5.6300 5.4400 5.0500 -2.0200 -0.5800 -0.3900 -28.5714% -10.3020% -7.1691%
SCP_Astral_10ng_24ms 7.5900 8.3600 5.9200 5.1300 -2.4600 -3.2300 -0.7900 -32.4111% -38.6364% -13.3446%
SCP_Astral_10ng_6ms 7.3800 4.8900 4.7900
SCP_Astral_10ng_ms 6.4500 5.1900 4.6600 4.3600 -2.0900 -0.8300 -0.3000 -32.4031% -15.9923% -6.4378%
SCP_Astral_250pg_12ms 4.7400 3.5100 3.4700 3.3400 -1.4000 -0.1700 -0.1300 -29.5359% -4.8433% -3.7464%
SCP_Astral_250pg_24ms 5.2600 4.1900 3.6100 3.4700 -1.7900 -0.7200 -0.1400 -34.0304% -17.1838% -3.8781%
SCP_Astral_250pg_3ms 4.6500 3.8300 3.4600 3.4000 -1.2500 -0.4300 -0.0600 -26.8817% -11.2272% -1.7341%
SCP_Astral_250pg_6ms 4.1700 3.3900 3.2700 3.2500 -0.9200 -0.1400 -0.0200 -22.0624% -4.1298% -0.6116%
SCP_Astral_500pg_12ms 5.2800 3.4900 3.5400
SCP_Astral_500pg_24ms 5.5100 3.8200 3.6100 -1.9000 -0.2100 -34.4828% -5.4974%
SCP_Astral_500pg_3ms 4.7300 3.6600 -1.0700 -22.6216%
SCP_Astral_500pg_6ms 4.6500 3.4300 3.5100 3.4300 -1.2200 +0 -0.0800 -26.2366% +0% -2.2792%
SCP_Astral_MBR 9.0400
Seer_Astral_45 100.3500 67.8100 66.2700
Seer_Astral_single 4.3100 5.7400 4.1200 -0.1900 -1.6200 -4.4084% -28.2230%
YEAST_KO_Astral 235.6300 216.9300 213.3300
EWZ_2P_MBR_Exploris 29 29.1900 24.7500 18.6700 -10.3300 -10.5200 -6.0800 -35.6207% -36.0397% -24.5657%
EWZ_2P_noMBR_Exploris 27.1100 28.3100 22.0700 18.7100 -8.4000 -9.6000 -3.3600 -30.9849% -33.9103% -15.2243%

EWZ_2P_MBR_Exploris_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_3P_Alternating_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_3P_Standard_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Alternating_3min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Alternating_5min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Standard_3min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Standard_5min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

Olsen_Exploris_3P_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_3ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_3ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_3ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_MBR_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png