Regression Metrics Report

Versions: v0.6.4, v0.6.6, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 5499336 7770128 7834374
KEAP1KO_Eclipse 1096494 1311411 1311411 1309371 +212877 -2040 -2040 +19.4143% -0.1556% -0.1556%
MTAC_3P_Alternating 586322 616475 616475 613658 +27336 -2817 -2817 +4.6623% -0.4570% -0.4570%
MTAC_3P_Standard 596590 623500 623500 619243 +22653 -4257 -4257 +3.7971% -0.6828% -0.6828%
MTAC_Yeast_Alternating_3min 137143 137143 137475 +332 +332 +0.2421% +0.2421%
MTAC_Yeast_Alternating_5min 155641 156733 156562 156648 +1007 -85 +86 +0.6470% -0.0542% +0.0549%
MTAC_Yeast_Standard_3min 138509 139777 139662 139709 +1200 -68 +47 +0.8664% -0.0486% +0.0337%
MTAC_Yeast_Standard_5min 158962 158983 158983 159672 +710 +689 +689 +0.4466% +0.4334% +0.4334%
Olsen_Astral_3P 3282083 3760070 3760070
Olsen_Exploris_3P 1022736 1155533 1155533 1125519 +102783 -30014 -30014 +10.0498% -2.5974% -2.5974%
SCIEX_3P 672242 749418 749418
SCP_Astral_1000pg_12ms 40882 41855 41855 42885 +2003 +1030 +1030 +4.8995% +2.4609% +2.4609%
SCP_Astral_1000pg_24ms 41069 42339 42344 42362 +1293 +23 +18 +3.1484% +0.0543% +0.0425%
SCP_Astral_1000pg_3ms 8740 23115 23115 22955 +14215 -160 -160 +162.6430% -0.6922% -0.6922%
SCP_Astral_1000pg_6ms 16935 17553 17553 18472 +1537 +919 +919 +9.0759% +5.2356% +5.2356%
SCP_Astral_10ng_12ms 99908 102934 102934 99288 -620 -3646 -3646 -0.6206% -3.5421% -3.5421%
SCP_Astral_10ng_24ms 71098 72525 72805 71361 +263 -1164 -1444 +0.3699% -1.6050% -1.9834%
SCP_Astral_10ng_6ms 115157 117282 117413 114201 -956 -3081 -3212 -0.8302% -2.6270% -2.7356%
SCP_Astral_10ng_ms 105704 106497 106497 105685 -19 -812 -812 -0.0180% -0.7625% -0.7625%
SCP_Astral_250pg_12ms 10194 10806 10806 11290 +1096 +484 +484 +10.7514% +4.4790% +4.4790%
SCP_Astral_250pg_24ms 14807 15433 15433 16051 +1244 +618 +618 +8.4014% +4.0044% +4.0044%
SCP_Astral_250pg_3ms 1261 2032 2032 2554 +1293 +522 +522 +102.5377% +25.6890% +25.6890%
SCP_Astral_250pg_6ms 1436 4783 4783 5797 +4361 +1014 +1014 +303.6908% +21.2001% +21.2001%
SCP_Astral_500pg_12ms 21710 21895 21895 22369 +659 +474 +474 +3.0355% +2.1649% +2.1649%
SCP_Astral_500pg_24ms 25860 26143 26143 26269 +409 +126 +126 +1.5816% +0.4820% +0.4820%
SCP_Astral_500pg_3ms 3484 6823 +3339 +95.8381%
SCP_Astral_500pg_6ms 10699 11474 11474 12810 +2111 +1336 +1336 +19.7308% +11.6437% +11.6437%
SCP_Astral_MBR 92167 93648 93648 92024 -143 -1624 -1624 -0.1552% -1.7342% -1.7342%
Seer_Astral_45 2512737 3122633 3122633
Seer_Astral_single 56522 56522 55483 -1039 -1039 -1.8382% -1.8382%
YEAST_KO_Astral 16088274 20363242 20387044
EWZ_2P_MBR_Exploris 1662994 1805248 1805248 1803687 +140693 -1561 -1561 +8.4602% -0.0865% -0.0865%
EWZ_2P_noMBR_Exploris 1608906 1770759 1770759 1777767 +168861 +7008 +7008 +10.4954% +0.3958% +0.3958%

Metric: identification.precursors.unique

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 246168 430621 431564
KEAP1KO_Eclipse 111504 133648 133648 131866 +20362 -1782 -1782 +18.2612% -1.3334% -1.3334%
MTAC_3P_Alternating 108267 117420 117420 114922 +6655 -2498 -2498 +6.1468% -2.1274% -2.1274%
MTAC_3P_Standard 110265 118733 118733 116040 +5775 -2693 -2693 +5.2374% -2.2681% -2.2681%
MTAC_Yeast_Alternating_3min 48709 48709 49176 +467 +467 +0.9588% +0.9588%
MTAC_Yeast_Alternating_5min 53969 55370 55197 55758 +1789 +388 +561 +3.3149% +0.7007% +1.0164%
MTAC_Yeast_Standard_3min 48621 50039 49836 50357 +1736 +318 +521 +3.5705% +0.6355% +1.0454%
MTAC_Yeast_Standard_5min 55060 56122 56122 56850 +1790 +728 +728 +3.2510% +1.2972% +1.2972%
Olsen_Astral_3P 198770 231187 231187
Olsen_Exploris_3P 51272 58902 58902 54927 +3655 -3975 -3975 +7.1286% -6.7485% -6.7485%
SCIEX_3P 82206 93832 93832
SCP_Astral_1000pg_12ms 14440 15016 15016 15458 +1018 +442 +442 +7.0499% +2.9435% +2.9435%
SCP_Astral_1000pg_24ms 14483 15025 15026 15047 +564 +22 +21 +3.8942% +0.1464% +0.1398%
SCP_Astral_1000pg_3ms 8740 9376 9376 9384 +644 +8 +8 +7.3684% +0.0853% +0.0853%
SCP_Astral_1000pg_6ms 8898 9259 9259 9818 +920 +559 +559 +10.3394% +6.0374% +6.0374%
SCP_Astral_10ng_12ms 34865 36293 36293 34390 -475 -1903 -1903 -1.3624% -5.2434% -5.2434%
SCP_Astral_10ng_24ms 24649 25391 25531 25028 +379 -363 -503 +1.5376% -1.4296% -1.9702%
SCP_Astral_10ng_6ms 40156 41556 41511 39927 -229 -1629 -1584 -0.5703% -3.9200% -3.8159%
SCP_Astral_10ng_ms 36688 37676 37676 37639 +951 -37 -37 +2.5921% -0.0982% -0.0982%
SCP_Astral_250pg_12ms 3666 3949 3949 4231 +565 +282 +282 +15.4119% +7.1410% +7.1410%
SCP_Astral_250pg_24ms 5299 5611 5611 5912 +613 +301 +301 +11.5682% +5.3645% +5.3645%
SCP_Astral_250pg_3ms 675 721 721 947 +272 +226 +226 +40.2963% +31.3454% +31.3454%
SCP_Astral_250pg_6ms 1436 1738 1738 2185 +749 +447 +447 +52.1588% +25.7192% +25.7192%
SCP_Astral_500pg_12ms 7794 7972 7972 8208 +414 +236 +236 +5.3118% +2.9604% +2.9604%
SCP_Astral_500pg_24ms 9158 9342 9342 9374 +216 +32 +32 +2.3586% +0.3425% +0.3425%
SCP_Astral_500pg_3ms 1846 2578 +732 +39.6533%
SCP_Astral_500pg_6ms 3874 4155 4155 4748 +874 +593 +593 +22.5607% +14.2720% +14.2720%
SCP_Astral_MBR 24110 25035 25035 24462 +352 -573 -573 +1.4600% -2.2888% -2.2888%
Seer_Astral_45 69584 89971 89971
Seer_Astral_single 56522 56522 55483 -1039 -1039 -1.8382% -1.8382%
YEAST_KO_Astral 66823 87992 87947
EWZ_2P_MBR_Exploris 50700 56121 56121 55057 +4357 -1064 -1064 +8.5937% -1.8959% -1.8959%
EWZ_2P_noMBR_Exploris 50591 56321 56321 55371 +4780 -950 -950 +9.4483% -1.6868% -1.6868%

Metric: identification.protein_groups.total

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 603278 723191 726455
KEAP1KO_Eclipse 87920 92814 92814 93173 +5253 +359 +359 +5.9747% +0.3868% +0.3868%
MTAC_3P_Alternating 63773 64043 64043 63983 +210 -60 -60 +0.3293% -0.0937% -0.0937%
MTAC_3P_Standard 64317 64591 64591 64558 +241 -33 -33 +0.3747% -0.0511% -0.0511%
MTAC_Yeast_Alternating_3min 12100 12100 12127 +27 +27 +0.2231% +0.2231%
MTAC_Yeast_Alternating_5min 12432 12411 12413 12459 +27 +48 +46 +0.2172% +0.3868% +0.3706%
MTAC_Yeast_Standard_3min 12008 12020 12034 12010 +2 -10 -24 +0.0167% -0.0832% -0.1994%
MTAC_Yeast_Standard_5min 12561 12508 12508 12537 -24 +29 +29 -0.1911% +0.2319% +0.2319%
Olsen_Astral_3P 236395 245754 245754
Olsen_Exploris_3P 146224 153802 153802 154480 +8256 +678 +678 +5.6461% +0.4408% +0.4408%
SCIEX_3P 70810 74209 74209
SCP_Astral_1000pg_12ms 9163 9538 9538 9533 +370 -5 -5 +4.0380% -0.0524% -0.0524%
SCP_Astral_1000pg_24ms 9298 9857 9852 9724 +426 -133 -128 +4.5816% -1.3493% -1.2992%
SCP_Astral_1000pg_3ms 2450 6084 6084 6171 +3721 +87 +87 +151.8776% +1.4300% +1.4300%
SCP_Astral_1000pg_6ms 4703 4588 4588 4879 +176 +291 +291 +3.7423% +6.3426% +6.3426%
SCP_Astral_10ng_12ms 16190 16202 16202 16097 -93 -105 -105 -0.5744% -0.6481% -0.6481%
SCP_Astral_10ng_24ms 13599 13792 13697 13580 -19 -212 -117 -0.1397% -1.5371% -0.8542%
SCP_Astral_10ng_6ms 17017 17179 17127 16895 -122 -284 -232 -0.7169% -1.6532% -1.3546%
SCP_Astral_10ng_ms 16252 16276 16276 16097 -155 -179 -179 -0.9537% -1.0998% -1.0998%
SCP_Astral_250pg_12ms 3647 3913 3913 3463 -184 -450 -450 -5.0452% -11.5001% -11.5001%
SCP_Astral_250pg_24ms 4300 4603 4603 4658 +358 +55 +55 +8.3256% +1.1949% +1.1949%
SCP_Astral_250pg_3ms 576 22 22 1038 +462 +1016 +1016 +80.2083% +4618.1818% +4618.1818%
SCP_Astral_250pg_6ms 637 2080 2080 2106 +1469 +26 +26 +230.6122% +1.2500% +1.2500%
SCP_Astral_500pg_12ms 6245 6346 6346 6095 -150 -251 -251 -2.4019% -3.9552% -3.9552%
SCP_Astral_500pg_24ms 6722 6729 6729 6910 +188 +181 +181 +2.7968% +2.6898% +2.6898%
SCP_Astral_500pg_3ms 982 2024 +1042 +106.1100%
SCP_Astral_500pg_6ms 3708 4007 4007 4036 +328 +29 +29 +8.8457% +0.7237% +0.7237%
SCP_Astral_MBR 20165 20214 20214 20004 -161 -210 -210 -0.7984% -1.0389% -1.0389%
Seer_Astral_45 225377 241502 241502
Seer_Astral_single 4662 4662 4726 +64 +64 +1.3728% +1.3728%
YEAST_KO_Astral 1300836 1388950 1386974
EWZ_2P_MBR_Exploris 239484 245804 245804 246413 +6929 +609 +609 +2.8933% +0.2478% +0.2478%
EWZ_2P_noMBR_Exploris 235990 245406 245406 244849 +8859 -557 -557 +3.7540% -0.2270% -0.2270%

Metric: identification.protein_groups.unique

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 21740 28560 28358
KEAP1KO_Eclipse 7845 8174 8174 8171 +326 -3 -3 +4.1555% -0.0367% -0.0367%
MTAC_3P_Alternating 11361 11494 11494 11446 +85 -48 -48 +0.7482% -0.4176% -0.4176%
MTAC_3P_Standard 11473 11609 11609 11560 +87 -49 -49 +0.7583% -0.4221% -0.4221%
MTAC_Yeast_Alternating_3min 4135 4135 4153 +18 +18 +0.4353% +0.4353%
MTAC_Yeast_Alternating_5min 4215 4229 4232 4255 +40 +26 +23 +0.9490% +0.6148% +0.5435%
MTAC_Yeast_Standard_3min 4075 4100 4113 4110 +35 +10 -3 +0.8589% +0.2439% -0.0729%
MTAC_Yeast_Standard_5min 4249 4249 4249 4262 +13 +13 +13 +0.3060% +0.3060% +0.3060%
Olsen_Astral_3P 13820 14399 14399
Olsen_Exploris_3P 7255 7623 7623 7408 +153 -215 -215 +2.1089% -2.8204% -2.8204%
SCIEX_3P 8652 9081 9081
SCP_Astral_1000pg_12ms 3245 3397 3397 3373 +128 -24 -24 +3.9445% -0.7065% -0.7065%
SCP_Astral_1000pg_24ms 3254 3466 3469 3451 +197 -15 -18 +6.0541% -0.4328% -0.5189%
SCP_Astral_1000pg_3ms 2450 2396 2396 2433 -17 +37 +37 -0.6939% +1.5442% +1.5442%
SCP_Astral_1000pg_6ms 2508 2436 2436 2574 +66 +138 +138 +2.6316% +5.6650% +5.6650%
SCP_Astral_10ng_12ms 5579 5627 5627 5535 -44 -92 -92 -0.7887% -1.6350% -1.6350%
SCP_Astral_10ng_24ms 4721 4803 4754 4744 +23 -59 -10 +0.4872% -1.2284% -0.2103%
SCP_Astral_10ng_6ms 5846 5950 5930 5831 -15 -119 -99 -0.2566% -2% -1.6695%
SCP_Astral_10ng_ms 5611 5655 5655 5614 +3 -41 -41 +0.0535% -0.7250% -0.7250%
SCP_Astral_250pg_12ms 1292 1424 1424 1258 -34 -166 -166 -2.6316% -11.6573% -11.6573%
SCP_Astral_250pg_24ms 1568 1660 1660 1722 +154 +62 +62 +9.8214% +3.7349% +3.7349%
SCP_Astral_250pg_3ms 307 8 8 383 +76 +375 +375 +24.7557% +4687.5000% +4687.5000%
SCP_Astral_250pg_6ms 637 756 756 791 +154 +35 +35 +24.1758% +4.6296% +4.6296%
SCP_Astral_500pg_12ms 2207 2275 2275 2204 -3 -71 -71 -0.1359% -3.1209% -3.1209%
SCP_Astral_500pg_24ms 2403 2388 2388 2462 +59 +74 +74 +2.4553% +3.0988% +3.0988%
SCP_Astral_500pg_3ms 525 758 +233 +44.3810%
SCP_Astral_500pg_6ms 1318 1447 1447 1482 +164 +35 +35 +12.4431% +2.4188% +2.4188%
SCP_Astral_MBR 4708 4754 4754 4704 -4 -50 -50 -0.0850% -1.0517% -1.0517%
Seer_Astral_45 5802 6299 6299
Seer_Astral_single 4662 4662 4726 +64 +64 +1.3728% +1.3728%
YEAST_KO_Astral 4565 4793 4786
EWZ_2P_MBR_Exploris 6831 7038 7038 7039 +208 +1 +1 +3.0449% +0.0142% +0.0142%
EWZ_2P_noMBR_Exploris 6858 7115 7115 7041 +183 -74 -74 +2.6684% -1.0401% -1.0401%

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0006 -0.0003 -0.0003 -0.0014 -0.0009 -0.0012 -0.0012
MTAC_3P_Alternating_Entrapment -0.0005 -0.0001 -0.0001 0.0002 +0.0006 +0.0003 +0.0003
MTAC_3P_Standard_Entrapment -0.0014 0.0002 0.0002 -0.0006 +0.0007 -0.0008 -0.0008
MTAC_Yeast_Alternating_3min_Entrapment -0.0020 -0.0020 -0.0023 -0.0003 -0.0003
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0013 -0.0013 -0.0013 -0.0009 -0.0001 -0.0001
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0013 -0.0013 -0.0019 -0.0000 -0.0006 -0.0006
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0020 -0.0035 -0.0025 -0.0016
Olsen_Astral_3P_Entrapment -0.0015 -0.0011
Olsen_Exploris_3P_Entrapment -0.0002 0.0002 -0.0006 -0.0004 -0.0008
SCIEX_3P_Entrapment -0.0005 -0.0001
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0016 -0.0038 -0.0016 -0.0023
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0033 -0.0027 +0.0027 +0.0006
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0037 -0.0037 -0.0058 -0.0029 -0.0022 -0.0022
SCP_Astral_1000pg_6ms_Entrapment -0.0002 -0.0011 -0.0011 -0.0018 -0.0016 -0.0007 -0.0007
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0023 -0.0023 -0.0007 +0.0015 +0.0016 +0.0016
SCP_Astral_10ng_24ms_Entrapment -0.0020 0.0009 -0.0019 +0.0001 -0.0028
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0027 -0.0026 -0.0002 +0.0000
SCP_Astral_10ng_6ms_Entrapment -0.0008 -0.0003 -0.0010 -0.0002 -0.0008
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0040 -0.0026 +0.0013 +0.0015
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0012 -0.0028 -0.0026 -0.0016
SCP_Astral_250pg_6ms_Entrapment -0.0051 -0.0026 +0.0025
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0020 -0.0020 -0.0033 -0.0011 -0.0013 -0.0013
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0031 -0.0013 -0.0001 +0.0018
SCP_Astral_500pg_3ms_Entrapment -0.0013
SCP_Astral_500pg_6ms_Entrapment -0.0031 -0.0031 -0.0015 +0.0016 +0.0016
SCP_Astral_MBR_Entrapment -0.0026 -0.0017 -0.0025 +0.0002 -0.0007
YEAST_KO_Astral_Entrapment -0.0024 -0.0025 -0.0025

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0010 -0.0031 -0.0031 -0.0022 -0.0012 +0.0010 +0.0010
MTAC_3P_Alternating_Entrapment -0.0010 -0.0006 -0.0006 -0.0014 -0.0004 -0.0007 -0.0007
MTAC_3P_Standard_Entrapment -0.0013 -0.0022 -0.0022 -0.0025 -0.0012 -0.0003 -0.0003
MTAC_Yeast_Alternating_3min_Entrapment -0.0050 -0.0050 -0.0045 +0.0005 +0.0005
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0038 -0.0038 -0.0031 +0.0010 +0.0007 +0.0007
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0050 -0.0050 -0.0057 +0.0001 -0.0007 -0.0007
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0045 -0.0038 -0.0002 +0.0007
Olsen_Astral_3P_Entrapment -0.0041 -0.0034
Olsen_Exploris_3P_Entrapment -0.0029 0.0002 -0.0034 -0.0005 -0.0036
SCIEX_3P_Entrapment -0.0031 -0.0032
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0046 -0.0050 -0.0000 -0.0004
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0058 -0.0045 +0.0025 +0.0013
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0036 -0.0036 -0.0073 -0.0014 -0.0037 -0.0037
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0049 -0.0049 -0.0022 -0.0004 +0.0028 +0.0028
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0049 -0.0049 -0.0040 +0.0014 +0.0009 +0.0009
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0023 -0.0021 +0.0011 +0.0002
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0073 -0.0068 -0.0031 +0.0005
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0023 -0.0029 +0.0025 -0.0006
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0076 -0.0033 +0.0020 +0.0044
SCP_Astral_250pg_24ms_Entrapment -0.0042 -0.0042 -0.0025 +0.0017 +0.0017
SCP_Astral_250pg_3ms_Entrapment -0.0028 0 0
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0067 -0.0067 -0.0043 +0.0056 +0.0023 +0.0023
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0054 -0.0054 -0.0025 +0.0011 +0.0029 +0.0029
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0008 -0.0037 -0.0017 -0.0029
SCP_Astral_500pg_3ms_Entrapment -0.0042 0.0071 -0.0013 +0.0029 -0.0084
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0045 -0.0045 -0.0050 -0.0005 -0.0004 -0.0004
SCP_Astral_MBR_Entrapment -0.0059 -0.0019 -0.0010 +0.0049 +0.0009
YEAST_KO_Astral_Entrapment -0.0065 -0.0049 -0.0049

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0005 -0.0004 -0.0004 -0.0009 -0.0004 -0.0005 -0.0005
MTAC_3P_Alternating_Entrapment -0.0001 0.0003 0.0003 0.0004 +0.0005 +0.0001 +0.0001
MTAC_3P_Standard_Entrapment -0.0009 0.0001 0.0001 -0.0004 +0.0005 -0.0005 -0.0005
MTAC_Yeast_Alternating_3min_Entrapment -0.0013 -0.0013 -0.0015 -0.0002 -0.0002
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0008 -0.0008 -0.0007 -0.0003 +0.0001 +0.0001
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0007 -0.0007 -0.0012 -0.0003 -0.0005 -0.0005
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0010 -0.0020 -0.0012 -0.0010
Olsen_Astral_3P_Entrapment -0.0008 -0.0004
Olsen_Exploris_3P_Entrapment -0.0004 0.0005 -0.0004 +0.0001 -0.0008
SCIEX_3P_Entrapment -0.0005 -0.0001
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0013 -0.0028 -0.0013 -0.0015
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0028 -0.0027 +0.0019 +0.0002
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0022 -0.0022 -0.0043 -0.0023 -0.0021 -0.0021
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0006 -0.0006 -0.0016 -0.0018 -0.0010 -0.0010
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0012 -0.0012 -0.0007 +0.0009 +0.0005 +0.0005
SCP_Astral_10ng_24ms_Entrapment -0.0014 0.0004 -0.0014 +0.0000 -0.0017
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0020 -0.0023 -0.0003 -0.0003
SCP_Astral_10ng_6ms_Entrapment -0.0005 0.0002 -0.0003 +0.0002 -0.0005
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0027 -0.0006 +0.0024 +0.0020
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0008 -0.0019 -0.0012 -0.0011
SCP_Astral_250pg_6ms_Entrapment -0.0037 -0.0032 +0.0004
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0012 -0.0012 -0.0020 -0.0001 -0.0008 -0.0008
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0021 -0.0017 -0.0001 +0.0004
SCP_Astral_500pg_3ms_Entrapment 0.0019
SCP_Astral_500pg_6ms_Entrapment -0.0025 -0.0025 -0.0001 +0.0024 +0.0024
SCP_Astral_MBR_Entrapment -0.0017 -0.0015 -0.0015 +0.0003 +0.0000
YEAST_KO_Astral_Entrapment -0.0013 -0.0006 -0.0006

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0002 -0.0019 -0.0019 -0.0014 -0.0012 +0.0005 +0.0005
MTAC_3P_Alternating_Entrapment -0.0001 0.0001 0.0001 -0.0006 -0.0004 -0.0007 -0.0007
MTAC_3P_Standard_Entrapment -0.0008 -0.0012 -0.0012 -0.0009 -0.0000 +0.0004 +0.0004
MTAC_Yeast_Alternating_3min_Entrapment -0.0030 -0.0030 -0.0033 -0.0003 -0.0003
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0021 -0.0021 -0.0019 +0.0018 +0.0002 +0.0002
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0032 -0.0032 -0.0029 +0.0009 +0.0003 +0.0003
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0027 -0.0023 +0.0000 +0.0004
Olsen_Astral_3P_Entrapment -0.0024 -0.0024
Olsen_Exploris_3P_Entrapment -0.0026 0.0005 -0.0020 +0.0007 -0.0025
SCIEX_3P_Entrapment -0.0036 -0.0031
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0032 -0.0032 +0.0005 +0.0000
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0056 -0.0044 +0.0005 +0.0011
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0016 -0.0016 -0.0039 +0.0005 -0.0023 -0.0023
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0035 -0.0035 -0.0038 -0.0013 -0.0003 -0.0003
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0032 -0.0032 -0.0031 +0.0016 +0.0001 +0.0001
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0014 -0.0018 +0.0014 -0.0004
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0046 -0.0043 -0.0022 +0.0003
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0030 -0.0038 +0.0001 -0.0008
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0041 -0.0010 +0.0029 +0.0031
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0032 -0.0009 +0.0004 +0.0022
SCP_Astral_250pg_3ms_Entrapment -0.0060 -0.0082 -0.0082
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0068 -0.0068 -0.0011 +0.0088 +0.0057 +0.0057
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0040 -0.0040 -0.0039 +0.0001 +0.0002 +0.0002
SCP_Astral_500pg_24ms_Entrapment -0.0019 -0.0001 -0.0033 -0.0013 -0.0032
SCP_Astral_500pg_3ms_Entrapment -0.0032 0.0066 0.0000 +0.0032 -0.0066
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0022 -0.0022 -0.0026 -0.0006 -0.0004 -0.0004
SCP_Astral_MBR_Entrapment -0.0024 -0.0015 -0.0010 +0.0014 +0.0005
YEAST_KO_Astral_Entrapment -0.0041 -0.0029 -0.0029

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131 0.0067 0.0067 0.0153 +0.0022 +0.0086 +0.0086

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476 0.4086 0.4086 0.1204 +0.0729 -0.2882 -0.2882

keap1.precursors

Dataset Gene Run v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1 1 1 +1 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1 1 1 +1 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 0 2 +0 +0 +2
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 13 13 14 +4 +0 +1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 13 13 12 +4 +0 -1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 13 13 13 +3 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1 1 2 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1 1 2 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1 1 2 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 1 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 +0 +0 +0

keap1.protein_groups

Dataset Gene Run v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1 1 1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1 1 1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1 1 1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0 0 1 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0 0 1 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0 0 1 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 +0 +0 +0

Metric: cv.precursors.median_cv

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1423 0.1423 0.1412 -0.0047 -0.0011 -0.0011
MTAC_3P_Standard 0.1393 0.1363 0.1363 0.1359 -0.0034 -0.0004 -0.0004
MTAC_Yeast_Alternating_3min 0.1456 0.1456 0.1430 -0.0026 -0.0026
MTAC_Yeast_Alternating_5min 0.1531 0.1402 0.1404 0.1385 -0.0146 -0.0017 -0.0019
MTAC_Yeast_Standard_3min 0.1698 0.1644 0.1641 0.1622 -0.0076 -0.0021 -0.0019
MTAC_Yeast_Standard_5min 0.1503 0.1369 0.1369 0.1355 -0.0148 -0.0013 -0.0013
Olsen_Astral_3P 0.0823 0.0884 0.0884
Olsen_Exploris_3P 0.1480 0.1500 0.1500 0.1494 +0.0014 -0.0005 -0.0005
SCIEX_3P 0.1284 0.1281 0.1281

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0738 0.0738 0.0728 -0.0035 -0.0010 -0.0010
MTAC_3P_Standard 0.0723 0.0704 0.0704 0.0704 -0.0020 -0.0000 -0.0000
MTAC_Yeast_Alternating_3min 0.0670 0.0670 0.0672 +0.0001 +0.0001
MTAC_Yeast_Alternating_5min 0.0778 0.0596 0.0598 0.0585 -0.0193 -0.0011 -0.0013
MTAC_Yeast_Standard_3min 0.0792 0.0772 0.0772 0.0758 -0.0035 -0.0014 -0.0014
MTAC_Yeast_Standard_5min 0.0770 0.0567 0.0567 0.0571 -0.0199 +0.0005 +0.0005
Olsen_Astral_3P 0.0374 0.0373 0.0373
Olsen_Exploris_3P 0.1028 0.1020 0.1020 0.1032 +0.0004 +0.0012 +0.0012
SCIEX_3P 0.0864 0.0834 0.0834

fold_change.error.precursors

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0690 -0.0690 -0.0641 -0.0024 +0 -0.0048
MTAC_3P_Alternating human A vs B -0.0432 -0.0352 -0.0352 -0.0416 -0.0079 +0 +0.0063
MTAC_3P_Alternating yeast A vs B -0.0026 0.0043 0.0043 -0.0097 +0.0017 +0 +0.0054
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1260 -0.1260 -0.1168 +0.0015 +0 -0.0092
MTAC_3P_Standard human A vs B -0.0785 -0.0730 -0.0730 -0.0731 -0.0055 +0 +0.0002
MTAC_3P_Standard yeast A vs B -0.0337 -0.0254 -0.0254 -0.0403 -0.0083 +0 +0.0149
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0684 -0.0684 +0.0114 +0
Olsen_Astral_3P ecoli D vs C -0.2013 -0.2131 -0.2131 +0.0117 +0
Olsen_Astral_3P ecoli F vs E 0.0193 -0.0124 -0.0124 -0.0069 +0
Olsen_Astral_3P human B vs A -0.0036 -0.0104 -0.0104 +0.0067 +0
Olsen_Astral_3P human D vs C -0.3258 -0.3340 -0.3340 +0.0083 +0
Olsen_Astral_3P human F vs E 0.0777 0.0752 0.0752 -0.0025 +0
Olsen_Astral_3P yeast B vs A 0.0756 0.0863 0.0863 +0.0108 +0
Olsen_Astral_3P yeast D vs C -0.2263 -0.2274 -0.2274 +0.0011 +0
Olsen_Astral_3P yeast F vs E 0.1940 0.2202 0.2202 +0.0262 +0
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2234 0.2234 0.2321 -0.0038 +0 +0.0087
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0755 -0.0755 -0.0758 +0.0068 +0 +0.0003
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2741 0.2741 0.2696 +0.0186 +0 -0.0045
Olsen_Exploris_3P human B vs A 0.0955 0.1004 0.1004 0.0971 +0.0049 +0 -0.0032
Olsen_Exploris_3P human D vs C -0.0535 -0.0539 -0.0539 -0.0534 +0.0004 +0 -0.0005
Olsen_Exploris_3P human F vs E 0.1998 0.2053 0.2053 0.2034 +0.0054 +0 -0.0019
Olsen_Exploris_3P yeast B vs A 0.0478 0.0464 0.0464 0.0275 -0.0014 +0 -0.0190
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1118 -0.1118 -0.1116 +0.0042 +0 -0.0002
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0906 -0.0906 -0.0841 +0.0227 +0 -0.0065
SCIEX_3P ecoli B vs A -0.0531 -0.0718 -0.0718 +0.0187 +0
SCIEX_3P ecoli C vs A -0.0580 -0.0539 -0.0539 -0.0042 +0
SCIEX_3P ecoli C vs B -0.0146 0.0095 0.0095 -0.0050 +0
SCIEX_3P human B vs A -0.0334 -0.0452 -0.0452 +0.0117 +0
SCIEX_3P human C vs A -0.0804 -0.0564 -0.0564 -0.0241 +0
SCIEX_3P human C vs B -0.0484 -0.0152 -0.0152 -0.0332 +0
SCIEX_3P yeast B vs A -0.0084 -0.0194 -0.0194 +0.0110 +0
SCIEX_3P yeast C vs A -0.1064 -0.0712 -0.0712 -0.0352 +0
SCIEX_3P yeast C vs B -0.0912 -0.0433 -0.0433 -0.0479 +0

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0665 -0.0665 -0.0603 +0.0011 +0 -0.0061
MTAC_3P_Alternating human A vs B -0.0451 -0.0368 -0.0368 -0.0426 -0.0083 +0 +0.0057
MTAC_3P_Alternating yeast A vs B 0.0016 0.0064 0.0064 -0.0142 +0.0048 +0 +0.0077
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1245 -0.1245 -0.1115 +0.0000 +0 -0.0130
MTAC_3P_Standard human A vs B -0.0772 -0.0708 -0.0708 -0.0723 -0.0064 +0 +0.0015
MTAC_3P_Standard yeast A vs B -0.0322 -0.0248 -0.0248 -0.0411 -0.0075 +0 +0.0163
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0651 -0.0651 +0.0198 +0
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1660 -0.1660 +0.0046 +0
Olsen_Astral_3P ecoli F vs E 0.0601 0.0256 0.0256 -0.0344 +0
Olsen_Astral_3P human B vs A -0.0149 -0.0219 -0.0219 +0.0070 +0
Olsen_Astral_3P human D vs C -0.2928 -0.3003 -0.3003 +0.0075 +0
Olsen_Astral_3P human F vs E 0.0700 0.0700 0.0700 -0.0001 +0
Olsen_Astral_3P yeast B vs A 0.0543 0.0660 0.0660 +0.0118 +0
Olsen_Astral_3P yeast D vs C -0.1994 -0.1997 -0.1997 +0.0003 +0
Olsen_Astral_3P yeast F vs E 0.1690 0.1963 0.1963 +0.0273 +0
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2133 0.2133 0.2153 -0.0039 +0 +0.0021
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0743 -0.0743 -0.0722 +0.0080 +0 -0.0021
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3042 0.3042 0.3063 +0.0484 +0 +0.0021
Olsen_Exploris_3P human B vs A 0.0841 0.0878 0.0878 0.0853 +0.0037 +0 -0.0025
Olsen_Exploris_3P human D vs C -0.0502 -0.0508 -0.0508 -0.0511 +0.0006 +0 +0.0003
Olsen_Exploris_3P human F vs E 0.1988 0.2026 0.2026 0.2029 +0.0038 +0 +0.0003
Olsen_Exploris_3P yeast B vs A 0.0433 0.0386 0.0386 0.0315 -0.0047 +0 -0.0071
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1163 -0.1163 -0.1209 +0.0068 +0 +0.0046
Olsen_Exploris_3P yeast F vs E -0.0534 -0.1043 -0.1043 -0.1225 +0.0509 +0 +0.0182
SCIEX_3P ecoli B vs A -0.0415 -0.0613 -0.0613 +0.0198 +0
SCIEX_3P ecoli C vs A -0.0531 -0.0459 -0.0459 -0.0072 +0
SCIEX_3P ecoli C vs B -0.0149 0.0153 0.0153 +0.0003 +0
SCIEX_3P human B vs A -0.0318 -0.0450 -0.0450 +0.0132 +0
SCIEX_3P human C vs A -0.0819 -0.0580 -0.0580 -0.0239 +0
SCIEX_3P human C vs B -0.0489 -0.0140 -0.0140 -0.0349 +0
SCIEX_3P yeast B vs A -0.0091 -0.0233 -0.0233 +0.0141 +0
SCIEX_3P yeast C vs A -0.1151 -0.0731 -0.0731 -0.0420 +0
SCIEX_3P yeast C vs B -0.1020 -0.0500 -0.0500 -0.0520 +0

fold_change.variance.precursors

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.2986 0.2986 0.2978 +0.0367 +0 -0.0008
MTAC_3P_Alternating human A vs B 0.1984 0.2126 0.2126 0.2075 +0.0142 +0 -0.0051
MTAC_3P_Alternating yeast A vs B 0.2558 0.2707 0.2707 0.2693 +0.0148 +0 -0.0014
MTAC_3P_Standard ecoli A vs B 0.2681 0.3085 0.3085 0.2986 +0.0404 +0 -0.0099
MTAC_3P_Standard human A vs B 0.2062 0.2230 0.2230 0.2165 +0.0168 +0 -0.0065
MTAC_3P_Standard yeast A vs B 0.2555 0.2741 0.2741 0.2753 +0.0186 +0 +0.0013
Olsen_Astral_3P ecoli B vs A 0.5438 0.5988 0.5988 +0.0550 +0
Olsen_Astral_3P ecoli D vs C 0.3566 0.3951 0.3951 +0.0384 +0
Olsen_Astral_3P ecoli F vs E 1.1682 1.3605 1.3605 +0.1923 +0
Olsen_Astral_3P human B vs A 0.2100 0.2539 0.2539 +0.0439 +0
Olsen_Astral_3P human D vs C 0.2930 0.3416 0.3416 +0.0486 +0
Olsen_Astral_3P human F vs E 0.3046 0.3584 0.3584 +0.0538 +0
Olsen_Astral_3P yeast B vs A 0.2937 0.3308 0.3308 +0.0371 +0
Olsen_Astral_3P yeast D vs C 0.2553 0.2849 0.2849 +0.0296 +0
Olsen_Astral_3P yeast F vs E 0.4774 0.5563 0.5563 +0.0788 +0
Olsen_Exploris_3P ecoli B vs A 0.5783 0.6122 0.6122 0.6580 +0.0339 +0 +0.0458
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1567 0.1567 0.1520 -0.0061 +0 -0.0048
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8085 0.8085 0.9860 +0.0041 +0 +0.1775
Olsen_Exploris_3P human B vs A 0.3372 0.3388 0.3388 0.3432 +0.0015 +0 +0.0044
Olsen_Exploris_3P human D vs C 0.1096 0.1750 0.1750 0.1522 +0.0655 +0 -0.0228
Olsen_Exploris_3P human F vs E 0.3024 0.3305 0.3305 0.3276 +0.0280 +0 -0.0028
Olsen_Exploris_3P yeast B vs A 0.6189 0.5961 0.5961 0.6617 -0.0228 +0 +0.0656
Olsen_Exploris_3P yeast D vs C 0.1498 0.2462 0.2462 0.2215 +0.0964 +0 -0.0247
Olsen_Exploris_3P yeast F vs E 1.0859 1.1525 1.1525 1.2552 +0.0666 +0 +0.1027
SCIEX_3P ecoli B vs A 0.5007 0.5347 0.5347 +0.0340 +0
SCIEX_3P ecoli C vs A 0.5855 0.5991 0.5991 +0.0136 +0
SCIEX_3P ecoli C vs B 0.1466 0.1463 0.1463 -0.0003 +0
SCIEX_3P human B vs A 0.1942 0.2132 0.2132 +0.0190 +0
SCIEX_3P human C vs A 0.2171 0.2455 0.2455 +0.0284 +0
SCIEX_3P human C vs B 0.1705 0.1985 0.1985 +0.0280 +0
SCIEX_3P yeast B vs A 0.2341 0.2465 0.2465 +0.0124 +0
SCIEX_3P yeast C vs A 0.5719 0.6150 0.6150 +0.0431 +0
SCIEX_3P yeast C vs B 0.4881 0.5513 0.5513 +0.0632 +0

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 v0.6.6 develop current Δ v0.6.6 vs v0.6.4 Δ develop vs v0.6.6 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1525 0.1525 0.1098 +0.0230 +0 -0.0427
MTAC_3P_Alternating human A vs B 0.0731 0.0757 0.0757 0.0732 +0.0026 +0 -0.0025
MTAC_3P_Alternating yeast A vs B 0.1300 0.1123 0.1123 0.1108 -0.0177 +0 -0.0015
MTAC_3P_Standard ecoli A vs B 0.1320 0.1244 0.1244 0.1197 -0.0076 +0 -0.0047
MTAC_3P_Standard human A vs B 0.0679 0.0706 0.0706 0.0693 +0.0026 +0 -0.0013
MTAC_3P_Standard yeast A vs B 0.1262 0.1294 0.1294 0.1417 +0.0033 +0 +0.0122
Olsen_Astral_3P ecoli B vs A 0.1924 0.2322 0.2322 +0.0399 +0
Olsen_Astral_3P ecoli D vs C 0.1089 0.1342 0.1342 +0.0252 +0
Olsen_Astral_3P ecoli F vs E 0.3405 0.4293 0.4293 +0.0889 +0
Olsen_Astral_3P human B vs A 0.0420 0.0445 0.0445 +0.0025 +0
Olsen_Astral_3P human D vs C 0.0549 0.0649 0.0649 +0.0100 +0
Olsen_Astral_3P human F vs E 0.0528 0.0597 0.0597 +0.0069 +0
Olsen_Astral_3P yeast B vs A 0.0563 0.0533 0.0533 -0.0030 +0
Olsen_Astral_3P yeast D vs C 0.0483 0.0505 0.0505 +0.0023 +0
Olsen_Astral_3P yeast F vs E 0.0959 0.1287 0.1287 +0.0328 +0
Olsen_Exploris_3P ecoli B vs A 0.2033 0.2490 0.2490 0.2290 +0.0457 +0 -0.0199
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0575 0.0575 0.0471 -0.0061 +0 -0.0105
Olsen_Exploris_3P ecoli F vs E 0.4584 0.4220 0.4220 0.4702 -0.0364 +0 +0.0483
Olsen_Exploris_3P human B vs A 0.0646 0.0587 0.0587 0.0636 -0.0059 +0 +0.0049
Olsen_Exploris_3P human D vs C 0.0301 0.0346 0.0346 0.0281 +0.0045 +0 -0.0065
Olsen_Exploris_3P human F vs E 0.0759 0.0741 0.0741 0.0821 -0.0018 +0 +0.0080
Olsen_Exploris_3P yeast B vs A 0.2336 0.2060 0.2060 0.2487 -0.0276 +0 +0.0427
Olsen_Exploris_3P yeast D vs C 0.0715 0.0758 0.0758 0.0742 +0.0043 +0 -0.0016
Olsen_Exploris_3P yeast F vs E 0.5309 0.4212 0.4212 0.6046 -0.1098 +0 +0.1835
SCIEX_3P ecoli B vs A 0.2191 0.3229 0.3229 +0.1039 +0
SCIEX_3P ecoli C vs A 0.2647 0.3082 0.3082 +0.0434 +0
SCIEX_3P ecoli C vs B 0.0574 0.0650 0.0650 +0.0076 +0
SCIEX_3P human B vs A 0.0657 0.0604 0.0604 -0.0052 +0
SCIEX_3P human C vs A 0.0731 0.0655 0.0655 -0.0076 +0
SCIEX_3P human C vs B 0.0556 0.0615 0.0615 +0.0059 +0
SCIEX_3P yeast B vs A 0.1098 0.0968 0.0968 -0.0129 +0
SCIEX_3P yeast C vs A 0.2938 0.3167 0.3167 +0.0229 +0
SCIEX_3P yeast C vs B 0.2531 0.2947 0.2947 +0.0416 +0

Metric: runtime

Dataset v0.6.4 v0.6.6 develop current Δ current vs v0.6.4 Δ current vs v0.6.6 Δ current vs develop % current vs v0.6.4 % current vs v0.6.6 % current vs develop
APMS_Astral 247.2300 244.2700 247.1600
KEAP1KO_Eclipse 24.0700 22.8000 19.6500 20.5800 -3.4900 -2.2200 +0.9300 -14.4994% -9.7368% +4.7328%
MTAC_3P_Alternating 12.7500 13.6800 8.5700 9.9600 -2.7900 -3.7200 +1.3900 -21.8824% -27.1930% +16.2194%
MTAC_3P_Standard 12.3100 13.0600 10.2700 9.6100 -2.7000 -3.4500 -0.6600 -21.9334% -26.4165% -6.4265%
MTAC_Yeast_Alternating_3min 5.4900 4.0600 4.0500 -1.4400 -0.0100 -26.2295% -0.2463%
MTAC_Yeast_Alternating_5min 5.3800 4.7200 4.1500 4.5500 -0.8300 -0.1700 +0.4000 -15.4275% -3.6017% +9.6386%
MTAC_Yeast_Standard_3min 5.4300 5.6500 4.0200 4.6900 -0.7400 -0.9600 +0.6700 -13.6280% -16.9912% +16.6667%
MTAC_Yeast_Standard_5min 5.5500 4.3000 4.2900 4.2900 -1.2600 -0.0100 +0 -22.7027% -0.2326% +0%
Olsen_Astral_3P 76.4000 66.2000 62.2200
Olsen_Exploris_3P 27.6600 23.7200 20.3200 18.4000 -9.2600 -5.3200 -1.9200 -33.4779% -22.4283% -9.4488%
SCIEX_3P 30.2900 33.2900 28.0700
SCP_Astral_1000pg_12ms 5.7900 5.9000 4.6200 -1.1700 -1.2800 -20.2073% -21.6949%
SCP_Astral_1000pg_24ms 6.2600 5.2000 4.4400 4.5600 -1.7000 -0.6400 +0.1200 -27.1565% -12.3077% +2.7027%
SCP_Astral_1000pg_3ms 4.5200 6.1100 3.7600 3.7900 -0.7300 -2.3200 +0.0300 -16.1504% -37.9705% +0.7979%
SCP_Astral_1000pg_6ms 5.7400 3.5300 3.5300 5.4200 -0.3200 +1.8900 +1.8900 -5.5749% +53.5411% +53.5411%
SCP_Astral_10ng_12ms 7.0700 5.6300 5.4400 5.7200 -1.3500 +0.0900 +0.2800 -19.0948% +1.5986% +5.1471%
SCP_Astral_10ng_24ms 7.5900 8.3600 5.9200 7.3500 -0.2400 -1.0100 +1.4300 -3.1621% -12.0813% +24.1554%
SCP_Astral_10ng_6ms 7.3800 4.8900 4.7900 4.7700 -2.6100 -0.1200 -0.0200 -35.3659% -2.4540% -0.4175%
SCP_Astral_10ng_ms 6.4500 5.1900 4.6600 4.4700 -1.9800 -0.7200 -0.1900 -30.6977% -13.8728% -4.0773%
SCP_Astral_250pg_12ms 4.7400 3.5100 3.4700 3.5200 -1.2200 +0.0100 +0.0500 -25.7384% +0.2849% +1.4409%
SCP_Astral_250pg_24ms 5.2600 4.1900 3.6100 3.9600 -1.3000 -0.2300 +0.3500 -24.7148% -5.4893% +9.6953%
SCP_Astral_250pg_3ms 4.6500 3.8300 3.4600 3.6300 -1.0200 -0.2000 +0.1700 -21.9355% -5.2219% +4.9133%
SCP_Astral_250pg_6ms 4.1700 3.3900 3.2700 3.3800 -0.7900 -0.0100 +0.1100 -18.9448% -0.2950% +3.3639%
SCP_Astral_500pg_12ms 5.2800 3.4900 3.5400 3.7500 -1.5300 +0.2600 +0.2100 -28.9773% +7.4499% +5.9322%
SCP_Astral_500pg_24ms 5.5100 3.8200 4.1300 -1.3800 +0.3100 -25.0454% +8.1152%
SCP_Astral_500pg_3ms 4.7300 3.6400 -1.0900 -23.0444%
SCP_Astral_500pg_6ms 4.6500 3.4300 3.5100 3.5100 -1.1400 +0.0800 +0 -24.5161% +2.3324% +0%
SCP_Astral_MBR 9.0400
Seer_Astral_45 100.3500 67.8100 66.2700
Seer_Astral_single 4.3100 5.7400 5.6300 +1.3200 -0.1100 +30.6265% -1.9164%
YEAST_KO_Astral 235.6300 216.9300 213.3300
EWZ_2P_MBR_Exploris 29 29.1900 24.7500 25.1800 -3.8200 -4.0100 +0.4300 -13.1724% -13.7376% +1.7374%
EWZ_2P_noMBR_Exploris 27.1100 28.3100 22.0700 23.0700 -4.0400 -5.2400 +1 -14.9023% -18.5094% +4.5310%

EWZ_2P_MBR_Exploris_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_3P_Alternating_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_3P_Standard_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Alternating_3min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Alternating_5min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Standard_3min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_Yeast_Standard_5min_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

Olsen_Exploris_3P_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_3ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_3ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_MBR_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png