Regression Metrics Report

Versions: v0.6.4, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 5499336 9469267
KEAP1KO_Eclipse 1096494 1314648
MTAC_3P_Alternating 586322 645506 616810 +30488 -28696 +5.1999% -4.4455%
MTAC_3P_Standard 596590 652929 624459 +27869 -28470 +4.6714% -4.3604%
MTAC_Yeast_Alternating_3min 141444 137374 -4070 -2.8775%
MTAC_Yeast_Alternating_5min 155641 161014 156541 +900 -4473 +0.5783% -2.7780%
MTAC_Yeast_Standard_3min 138509 144376 139841 +1332 -4535 +0.9617% -3.1411%
MTAC_Yeast_Standard_5min 158962 163119 158698 -264 -4421 -0.1661% -2.7103%
Olsen_Astral_3P 3282083 3932302
Olsen_Exploris_3P 1022736 1187531
SCIEX_3P 672242 781003
SCP_Astral_1000pg_12ms 40882 42633 42302 +1420 -331 +3.4734% -0.7764%
SCP_Astral_1000pg_24ms 41069 42861 42770 +1701 -91 +4.1418% -0.2123%
SCP_Astral_1000pg_3ms 8740 23233 23138 +14398 -95 +164.7368% -0.4089%
SCP_Astral_1000pg_6ms 16935 17606 17759 +824 +153 +4.8657% +0.8690%
SCP_Astral_10ng_12ms 99908 104786 103359 +3451 -1427 +3.4542% -1.3618%
SCP_Astral_10ng_24ms 71098 73279 72656 +1558 -623 +2.1913% -0.8502%
SCP_Astral_10ng_6ms 115157 120164 117377 +2220 -2787 +1.9278% -2.3193%
SCP_Astral_10ng_ms 105704 108824 105809 +105 -3015 +0.0993% -2.7705%
SCP_Astral_250pg_12ms 10194 10481 10481 +287 +0 +2.8154% +0%
SCP_Astral_250pg_24ms 14807 15407 15082 +275 -325 +1.8572% -2.1094%
SCP_Astral_250pg_3ms 1261
SCP_Astral_250pg_6ms 1436 4766
SCP_Astral_500pg_12ms 21710 22144 22000 +290 -144 +1.3358% -0.6503%
SCP_Astral_500pg_24ms 25860 26275 26142 +282 -133 +1.0905% -0.5062%
SCP_Astral_500pg_3ms 3484 5730
SCP_Astral_500pg_6ms 10699 11408 11408 +709 +0 +6.6268% +0%
SCP_Astral_MBR 92167 95988 94482 +2315 -1506 +2.5117% -1.5689%
Seer_Astral_45 2512737 3381664
Seer_Astral_single 56214
YEAST_KO_Astral 16088274 21173035
EWZ_2P_MBR_Exploris 1662994 1845470
EWZ_2P_noMBR_Exploris 1608906 1773446

Metric: identification.precursors.unique

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 246168 455696
KEAP1KO_Eclipse 111504 127963
MTAC_3P_Alternating 108267 118438 117912 +9645 -526 +8.9085% -0.4441%
MTAC_3P_Standard 110265 119698 119168 +8903 -530 +8.0742% -0.4428%
MTAC_Yeast_Alternating_3min 49018 48690 -328 -0.6691%
MTAC_Yeast_Alternating_5min 53969 55491 55141 +1172 -350 +2.1716% -0.6307%
MTAC_Yeast_Standard_3min 48621 50333 49930 +1309 -403 +2.6923% -0.8007%
MTAC_Yeast_Standard_5min 55060 56123 55906 +846 -217 +1.5365% -0.3867%
Olsen_Astral_3P 198770 232231
Olsen_Exploris_3P 51272 58771
SCIEX_3P 82206 93883
SCP_Astral_1000pg_12ms 14440 15015 15025 +585 +10 +4.0512% +0.0666%
SCP_Astral_1000pg_24ms 14483 14965 15077 +594 +112 +4.1014% +0.7484%
SCP_Astral_1000pg_3ms 8740 9379 9394 +654 +15 +7.4828% +0.1599%
SCP_Astral_1000pg_6ms 8898 9254 9295 +397 +41 +4.4617% +0.4431%
SCP_Astral_10ng_12ms 34865 36526 36447 +1582 -79 +4.5375% -0.2163%
SCP_Astral_10ng_24ms 24649 25356 25344 +695 -12 +2.8196% -0.0473%
SCP_Astral_10ng_6ms 40156 41829 41415 +1259 -414 +3.1353% -0.9897%
SCP_Astral_10ng_ms 36688 37701 37588 +900 -113 +2.4531% -0.2997%
SCP_Astral_250pg_12ms 3666 3826 3826 +160 +0 +4.3644% +0%
SCP_Astral_250pg_24ms 5299 5498 5461 +162 -37 +3.0572% -0.6730%
SCP_Astral_250pg_3ms 675
SCP_Astral_250pg_6ms 1436 1732
SCP_Astral_500pg_12ms 7794 7965 7970 +176 +5 +2.2581% +0.0628%
SCP_Astral_500pg_24ms 9158 9238 9280 +122 +42 +1.3322% +0.4546%
SCP_Astral_500pg_3ms 1846 2087
SCP_Astral_500pg_6ms 3874 4136 4136 +262 +0 +6.7630% +0%
SCP_Astral_MBR 24110 24907 24799 +689 -108 +2.8577% -0.4336%
Seer_Astral_45 69584 90046
Seer_Astral_single 56214
YEAST_KO_Astral 66823 88357
EWZ_2P_MBR_Exploris 50700 56358
EWZ_2P_noMBR_Exploris 50591 56344

Metric: identification.protein_groups.total

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 603278 857413
KEAP1KO_Eclipse 87920 94510
MTAC_3P_Alternating 63773 65484 63981 +208 -1503 +0.3262% -2.2952%
MTAC_3P_Standard 64317 66324 64438 +121 -1886 +0.1881% -2.8436%
MTAC_Yeast_Alternating_3min 12161 12061 -100 -0.8223%
MTAC_Yeast_Alternating_5min 12432 12521 12443 +11 -78 +0.0885% -0.6230%
MTAC_Yeast_Standard_3min 12008 12147 12053 +45 -94 +0.3748% -0.7739%
MTAC_Yeast_Standard_5min 12561 12515 12431 -130 -84 -1.0349% -0.6712%
Olsen_Astral_3P 236395 251204
Olsen_Exploris_3P 146224 155455
SCIEX_3P 70810 76639
SCP_Astral_1000pg_12ms 9163 9648 9589 +426 -59 +4.6491% -0.6115%
SCP_Astral_1000pg_24ms 9298 9760 9610 +312 -150 +3.3556% -1.5369%
SCP_Astral_1000pg_3ms 2450 6318 6274 +3824 -44 +156.0816% -0.6964%
SCP_Astral_1000pg_6ms 4703 4683 4832 +129 +149 +2.7429% +3.1817%
SCP_Astral_10ng_12ms 16190 16435 16346 +156 -89 +0.9636% -0.5415%
SCP_Astral_10ng_24ms 13599 13800 13724 +125 -76 +0.9192% -0.5507%
SCP_Astral_10ng_6ms 17017 17244 17149 +132 -95 +0.7757% -0.5509%
SCP_Astral_10ng_ms 16252 16214 16150 -102 -64 -0.6276% -0.3947%
SCP_Astral_250pg_12ms 3647 3456 3460 -187 +4 -5.1275% +0.1157%
SCP_Astral_250pg_24ms 4300 4563 4439 +139 -124 +3.2326% -2.7175%
SCP_Astral_250pg_3ms 576
SCP_Astral_250pg_6ms 637 1829
SCP_Astral_500pg_12ms 6245 6253 6059 -186 -194 -2.9784% -3.1025%
SCP_Astral_500pg_24ms 6722 6672 6650 -72 -22 -1.0711% -0.3297%
SCP_Astral_500pg_3ms 982 1122
SCP_Astral_500pg_6ms 3708 3659 3661 -47 +2 -1.2675% +0.0547%
SCP_Astral_MBR 20165 20427 20358 +193 -69 +0.9571% -0.3378%
Seer_Astral_45 225377 253299
Seer_Astral_single 4654
YEAST_KO_Astral 1300836 1405040
EWZ_2P_MBR_Exploris 239484 248270
EWZ_2P_noMBR_Exploris 235990 244440

Metric: identification.protein_groups.unique

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 21740 30170
KEAP1KO_Eclipse 7845 8105
MTAC_3P_Alternating 11361 11524 11481 +120 -43 +1.0562% -0.3731%
MTAC_3P_Standard 11473 11702 11535 +62 -167 +0.5404% -1.4271%
MTAC_Yeast_Alternating_3min 4129 4130 +1 +0.0242%
MTAC_Yeast_Alternating_5min 4215 4232 4249 +34 +17 +0.8066% +0.4017%
MTAC_Yeast_Standard_3min 4075 4127 4116 +41 -11 +1.0061% -0.2665%
MTAC_Yeast_Standard_5min 4249 4234 4222 -27 -12 -0.6354% -0.2834%
Olsen_Astral_3P 13820 14489
Olsen_Exploris_3P 7255 7623
SCIEX_3P 8652 9140
SCP_Astral_1000pg_12ms 3245 3409 3422 +177 +13 +5.4545% +0.3813%
SCP_Astral_1000pg_24ms 3254 3408 3377 +123 -31 +3.7800% -0.9096%
SCP_Astral_1000pg_3ms 2450 2447 2469 +19 +22 +0.7755% +0.8991%
SCP_Astral_1000pg_6ms 2508 2506 2555 +47 +49 +1.8740% +1.9553%
SCP_Astral_10ng_12ms 5579 5683 5684 +105 +1 +1.8821% +0.0176%
SCP_Astral_10ng_24ms 4721 4747 4742 +21 -5 +0.4448% -0.1053%
SCP_Astral_10ng_6ms 5846 5918 5955 +109 +37 +1.8645% +0.6252%
SCP_Astral_10ng_ms 5611 5574 5632 +21 +58 +0.3743% +1.0405%
SCP_Astral_250pg_12ms 1292 1295 1297 +5 +2 +0.3870% +0.1544%
SCP_Astral_250pg_24ms 1568 1658 1604 +36 -54 +2.2959% -3.2569%
SCP_Astral_250pg_3ms 307
SCP_Astral_250pg_6ms 637 645
SCP_Astral_500pg_12ms 2207 2228 2171 -36 -57 -1.6312% -2.5583%
SCP_Astral_500pg_24ms 2403 2383 2351 -52 -32 -2.1640% -1.3428%
SCP_Astral_500pg_3ms 525 441
SCP_Astral_500pg_6ms 1318 1318 1319 +1 +1 +0.0759% +0.0759%
SCP_Astral_MBR 4708 4725 4722 +14 -3 +0.2974% -0.0635%
Seer_Astral_45 5802 6348
Seer_Astral_single 4654
YEAST_KO_Astral 4565 4802
EWZ_2P_MBR_Exploris 6831 7059
EWZ_2P_noMBR_Exploris 6858 7083

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0006 -0.0003
MTAC_3P_Alternating_Entrapment -0.0005 -0.0001
MTAC_3P_Standard_Entrapment -0.0014 -0.0007
MTAC_Yeast_Alternating_3min_Entrapment -0.0018
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0010
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0020
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0018
Olsen_Astral_3P_Entrapment -0.0015 -0.0013
Olsen_Exploris_3P_Entrapment -0.0002 -0.0001
SCIEX_3P_Entrapment -0.0005 0.0001
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0031
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0025
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0050
SCP_Astral_1000pg_6ms_Entrapment -0.0002 -0.0003
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0018
SCP_Astral_10ng_24ms_Entrapment -0.0020 -0.0004
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0026
SCP_Astral_10ng_6ms_Entrapment -0.0008 0.0002
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0048
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0023
SCP_Astral_250pg_6ms_Entrapment -0.0051
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0022
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0044
SCP_Astral_500pg_6ms_Entrapment -0.0037
SCP_Astral_MBR_Entrapment -0.0026 -0.0017
YEAST_KO_Astral_Entrapment -0.0024 -0.0029

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0010 -0.0005
MTAC_3P_Alternating_Entrapment -0.0010 -0.0012
MTAC_3P_Standard_Entrapment -0.0013 -0.0035
MTAC_Yeast_Alternating_3min_Entrapment -0.0045
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0043
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0047
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0053
Olsen_Astral_3P_Entrapment -0.0041 -0.0028
Olsen_Exploris_3P_Entrapment -0.0029 -0.0006
SCIEX_3P_Entrapment -0.0031 -0.0035
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0062
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0064
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0057
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0038
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0049
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0048
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0053
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0055
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0083
SCP_Astral_250pg_24ms_Entrapment -0.0042 0.0001
SCP_Astral_250pg_3ms_Entrapment -0.0028 0.0216
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0051
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0048
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0041
SCP_Astral_500pg_3ms_Entrapment -0.0042 0.0051
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0062
SCP_Astral_MBR_Entrapment -0.0059 -0.0034
YEAST_KO_Astral_Entrapment -0.0065 -0.0044

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0005 -0.0004
MTAC_3P_Alternating_Entrapment -0.0001 0.0003
MTAC_3P_Standard_Entrapment -0.0009 -0.0004
MTAC_Yeast_Alternating_3min_Entrapment -0.0014
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0004
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0015
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0014
Olsen_Astral_3P_Entrapment -0.0008 -0.0007
Olsen_Exploris_3P_Entrapment -0.0004 0.0001
SCIEX_3P_Entrapment -0.0005 -0.0000
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0031
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0027
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0033
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0010
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0013
SCP_Astral_10ng_24ms_Entrapment -0.0014 -0.0003
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0019
SCP_Astral_10ng_6ms_Entrapment -0.0005 -0.0002
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0038
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0012
SCP_Astral_250pg_6ms_Entrapment -0.0037
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0021
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0034
SCP_Astral_500pg_6ms_Entrapment -0.0034
SCP_Astral_MBR_Entrapment -0.0017 -0.0015
YEAST_KO_Astral_Entrapment -0.0013 -0.0013

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0002 -0.0003
MTAC_3P_Alternating_Entrapment -0.0001 -0.0004
MTAC_3P_Standard_Entrapment -0.0008 -0.0023
MTAC_Yeast_Alternating_3min_Entrapment -0.0031
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0032
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0032
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0038
Olsen_Astral_3P_Entrapment -0.0024 -0.0024
Olsen_Exploris_3P_Entrapment -0.0026 0.0005
SCIEX_3P_Entrapment -0.0036 -0.0034
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0045
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0046
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0036
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0039
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0040
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0037
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0036
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0055
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0056
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0003
SCP_Astral_250pg_3ms_Entrapment -0.0060 0.0055
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0044
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0026
SCP_Astral_500pg_24ms_Entrapment -0.0019 -0.0022
SCP_Astral_500pg_3ms_Entrapment -0.0032 0.0014
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0042
SCP_Astral_MBR_Entrapment -0.0024 -0.0026
YEAST_KO_Astral_Entrapment -0.0041 -0.0025

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131 0.0140

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476 0.0529

keap1.precursors

Dataset Gene Run v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 2 +2
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 2 +2
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 2 +2
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 17 +8
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 15 +6
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 15 +5
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 +0

keap1.protein_groups

Dataset Gene Run v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1 +1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1 +1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 1 +1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 +0

Metric: cv.precursors.median_cv

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1512 0.1429 -0.0030 -0.0083
MTAC_3P_Standard 0.1393 0.1452 0.1375 -0.0018 -0.0078
MTAC_Yeast_Alternating_3min 0.1520 0.1459 -0.0061
MTAC_Yeast_Alternating_5min 0.1531 0.1473 0.1418 -0.0112 -0.0055
MTAC_Yeast_Standard_3min 0.1698 0.1700 0.1649 -0.0048 -0.0050
MTAC_Yeast_Standard_5min 0.1503 0.1432 0.1375 -0.0129 -0.0057
Olsen_Astral_3P 0.0823 0.0949
Olsen_Exploris_3P 0.1480 0.1542
SCIEX_3P 0.1284 0.1414

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0770 0.0748 -0.0015 -0.0022
MTAC_3P_Standard 0.0723 0.0732 0.0712 -0.0011 -0.0020
MTAC_Yeast_Alternating_3min 0.0684 0.0682 -0.0002
MTAC_Yeast_Alternating_5min 0.0778 0.0607 0.0606 -0.0172 -0.0001
MTAC_Yeast_Standard_3min 0.0792 0.0772 0.0775 -0.0017 +0.0003
MTAC_Yeast_Standard_5min 0.0770 0.0585 0.0578 -0.0193 -0.0008
Olsen_Astral_3P 0.0374 0.0391
Olsen_Exploris_3P 0.1028 0.1038
SCIEX_3P 0.0864 0.0911

fold_change.error.precursors

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0726 -0.0747 +0.0011 +0.0021
MTAC_3P_Alternating human A vs B -0.0432 -0.0401 -0.0397 -0.0031 -0.0004
MTAC_3P_Alternating yeast A vs B -0.0026 -0.0065 -0.0020 +0.0039 -0.0045
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1247 -0.1279 +0.0001 +0.0032
MTAC_3P_Standard human A vs B -0.0785 -0.0751 -0.0748 -0.0034 -0.0003
MTAC_3P_Standard yeast A vs B -0.0337 -0.0336 -0.0282 -0.0000 -0.0054
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0620 +0.0050
Olsen_Astral_3P ecoli D vs C -0.2013 -0.1942 -0.0071
Olsen_Astral_3P ecoli F vs E 0.0193 -0.0246 +0.0053
Olsen_Astral_3P human B vs A -0.0036 -0.0079 +0.0042
Olsen_Astral_3P human D vs C -0.3258 -0.3336 +0.0078
Olsen_Astral_3P human F vs E 0.0777 0.0787 +0.0009
Olsen_Astral_3P yeast B vs A 0.0756 0.0646 -0.0110
Olsen_Astral_3P yeast D vs C -0.2263 -0.2417 +0.0154
Olsen_Astral_3P yeast F vs E 0.1940 0.1845 -0.0095
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2380 +0.0108
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0750 +0.0062
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2750 +0.0194
Olsen_Exploris_3P human B vs A 0.0955 0.1046 +0.0092
Olsen_Exploris_3P human D vs C -0.0535 -0.0555 +0.0021
Olsen_Exploris_3P human F vs E 0.1998 0.2112 +0.0113
Olsen_Exploris_3P yeast B vs A 0.0478 0.0400 -0.0078
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1099 +0.0024
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0767 +0.0088
SCIEX_3P ecoli B vs A -0.0531 -0.0523 -0.0008
SCIEX_3P ecoli C vs A -0.0580 -0.0507 -0.0074
SCIEX_3P ecoli C vs B -0.0146 -0.0004 -0.0142
SCIEX_3P human B vs A -0.0334 -0.0480 +0.0146
SCIEX_3P human C vs A -0.0804 -0.0838 +0.0033
SCIEX_3P human C vs B -0.0484 -0.0372 -0.0112
SCIEX_3P yeast B vs A -0.0084 -0.0312 +0.0228
SCIEX_3P yeast C vs A -0.1064 -0.1224 +0.0161
SCIEX_3P yeast C vs B -0.0912 -0.0857 -0.0055

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0641 -0.0665 -0.0012 +0.0024
MTAC_3P_Alternating human A vs B -0.0451 -0.0401 -0.0401 -0.0050 +0.0000
MTAC_3P_Alternating yeast A vs B 0.0016 -0.0045 0.0012 +0.0029 -0.0033
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1252 -0.1252 +0.0008 -0.0000
MTAC_3P_Standard human A vs B -0.0772 -0.0732 -0.0716 -0.0040 -0.0016
MTAC_3P_Standard yeast A vs B -0.0322 -0.0312 -0.0298 -0.0011 -0.0013
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0606 +0.0153
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1617 +0.0004
Olsen_Astral_3P ecoli F vs E 0.0601 -0.0107 -0.0494
Olsen_Astral_3P human B vs A -0.0149 -0.0195 +0.0046
Olsen_Astral_3P human D vs C -0.2928 -0.3035 +0.0107
Olsen_Astral_3P human F vs E 0.0700 0.0710 +0.0010
Olsen_Astral_3P yeast B vs A 0.0543 0.0423 -0.0120
Olsen_Astral_3P yeast D vs C -0.1994 -0.2199 +0.0205
Olsen_Astral_3P yeast F vs E 0.1690 0.1600 -0.0089
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2234 +0.0062
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0711 +0.0048
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3009 +0.0451
Olsen_Exploris_3P human B vs A 0.0841 0.0919 +0.0078
Olsen_Exploris_3P human D vs C -0.0502 -0.0527 +0.0025
Olsen_Exploris_3P human F vs E 0.1988 0.2094 +0.0106
Olsen_Exploris_3P yeast B vs A 0.0433 0.0379 -0.0055
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1125 +0.0030
Olsen_Exploris_3P yeast F vs E -0.0534 -0.0910 +0.0376
SCIEX_3P ecoli B vs A -0.0415 -0.0501 +0.0086
SCIEX_3P ecoli C vs A -0.0531 -0.0443 -0.0088
SCIEX_3P ecoli C vs B -0.0149 0.0034 -0.0115
SCIEX_3P human B vs A -0.0318 -0.0482 +0.0164
SCIEX_3P human C vs A -0.0819 -0.0856 +0.0037
SCIEX_3P human C vs B -0.0489 -0.0374 -0.0115
SCIEX_3P yeast B vs A -0.0091 -0.0369 +0.0278
SCIEX_3P yeast C vs A -0.1151 -0.1334 +0.0183
SCIEX_3P yeast C vs B -0.1020 -0.0969 -0.0051

fold_change.variance.precursors

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.3094 0.2933 +0.0475 -0.0161
MTAC_3P_Alternating human A vs B 0.1984 0.2120 0.2159 +0.0136 +0.0040
MTAC_3P_Alternating yeast A vs B 0.2558 0.2683 0.2685 +0.0125 +0.0002
MTAC_3P_Standard ecoli A vs B 0.2681 0.2977 0.2894 +0.0295 -0.0083
MTAC_3P_Standard human A vs B 0.2062 0.2191 0.2254 +0.0129 +0.0063
MTAC_3P_Standard yeast A vs B 0.2555 0.2777 0.2745 +0.0222 -0.0032
Olsen_Astral_3P ecoli B vs A 0.5438 0.6493 +0.1055
Olsen_Astral_3P ecoli D vs C 0.3566 0.3926 +0.0360
Olsen_Astral_3P ecoli F vs E 1.1682 1.4983 +0.3301
Olsen_Astral_3P human B vs A 0.2100 0.2514 +0.0415
Olsen_Astral_3P human D vs C 0.2930 0.3483 +0.0553
Olsen_Astral_3P human F vs E 0.3046 0.3455 +0.0408
Olsen_Astral_3P yeast B vs A 0.2937 0.3305 +0.0367
Olsen_Astral_3P yeast D vs C 0.2553 0.2816 +0.0263
Olsen_Astral_3P yeast F vs E 0.4774 0.5527 +0.0753
Olsen_Exploris_3P ecoli B vs A 0.5783 0.6114 +0.0331
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1664 +0.0035
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8222 +0.0179
Olsen_Exploris_3P human B vs A 0.3372 0.3704 +0.0332
Olsen_Exploris_3P human D vs C 0.1096 0.1151 +0.0055
Olsen_Exploris_3P human F vs E 0.3024 0.3270 +0.0245
Olsen_Exploris_3P yeast B vs A 0.6189 0.6738 +0.0548
Olsen_Exploris_3P yeast D vs C 0.1498 0.1828 +0.0330
Olsen_Exploris_3P yeast F vs E 1.0859 1.1447 +0.0588
SCIEX_3P ecoli B vs A 0.5007 0.5391 +0.0384
SCIEX_3P ecoli C vs A 0.5855 0.6169 +0.0314
SCIEX_3P ecoli C vs B 0.1466 0.1570 +0.0104
SCIEX_3P human B vs A 0.1942 0.2063 +0.0120
SCIEX_3P human C vs A 0.2171 0.2350 +0.0179
SCIEX_3P human C vs B 0.1705 0.1864 +0.0159
SCIEX_3P yeast B vs A 0.2341 0.2439 +0.0098
SCIEX_3P yeast C vs A 0.5719 0.6198 +0.0479
SCIEX_3P yeast C vs B 0.4881 0.5625 +0.0744

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1420 0.1328 +0.0125 -0.0091
MTAC_3P_Alternating human A vs B 0.0731 0.0703 0.0688 -0.0029 -0.0015
MTAC_3P_Alternating yeast A vs B 0.1300 0.1159 0.1136 -0.0141 -0.0023
MTAC_3P_Standard ecoli A vs B 0.1320 0.1400 0.1215 +0.0079 -0.0184
MTAC_3P_Standard human A vs B 0.0679 0.0728 0.0651 +0.0049 -0.0077
MTAC_3P_Standard yeast A vs B 0.1262 0.1241 0.1272 -0.0020 +0.0031
Olsen_Astral_3P ecoli B vs A 0.1924 0.2305 +0.0381
Olsen_Astral_3P ecoli D vs C 0.1089 0.1102 +0.0013
Olsen_Astral_3P ecoli F vs E 0.3405 0.5033 +0.1629
Olsen_Astral_3P human B vs A 0.0420 0.0519 +0.0099
Olsen_Astral_3P human D vs C 0.0549 0.0663 +0.0115
Olsen_Astral_3P human F vs E 0.0528 0.0609 +0.0081
Olsen_Astral_3P yeast B vs A 0.0563 0.0569 +0.0005
Olsen_Astral_3P yeast D vs C 0.0483 0.0536 +0.0054
Olsen_Astral_3P yeast F vs E 0.0959 0.1117 +0.0159
Olsen_Exploris_3P ecoli B vs A 0.2033 0.1886 -0.0147
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0596 -0.0040
Olsen_Exploris_3P ecoli F vs E 0.4584 0.4375 -0.0209
Olsen_Exploris_3P human B vs A 0.0646 0.0690 +0.0044
Olsen_Exploris_3P human D vs C 0.0301 0.0327 +0.0026
Olsen_Exploris_3P human F vs E 0.0759 0.0780 +0.0021
Olsen_Exploris_3P yeast B vs A 0.2336 0.2264 -0.0072
Olsen_Exploris_3P yeast D vs C 0.0715 0.0944 +0.0229
Olsen_Exploris_3P yeast F vs E 0.5309 0.5371 +0.0062
SCIEX_3P ecoli B vs A 0.2191 0.2477 +0.0286
SCIEX_3P ecoli C vs A 0.2647 0.2564 -0.0083
SCIEX_3P ecoli C vs B 0.0574 0.0694 +0.0120
SCIEX_3P human B vs A 0.0657 0.0783 +0.0127
SCIEX_3P human C vs A 0.0731 0.0809 +0.0078
SCIEX_3P human C vs B 0.0556 0.0633 +0.0077
SCIEX_3P yeast B vs A 0.1098 0.0831 -0.0267
SCIEX_3P yeast C vs A 0.2938 0.2587 -0.0351
SCIEX_3P yeast C vs B 0.2531 0.2542 +0.0010

Metric: runtime

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 247.2300 439.0500
KEAP1KO_Eclipse 24.0700 40.1100
MTAC_3P_Alternating 12.7500 18.0100 8.9600 -3.7900 -9.0500 -29.7255% -50.2499%
MTAC_3P_Standard 12.3100 17.3000 9.8000 -2.5100 -7.5000 -20.3899% -43.3526%
MTAC_Yeast_Alternating_3min 12.7000 4.1100 -8.5900 -67.6378%
MTAC_Yeast_Alternating_5min 5.3800 14.1500 4.1800 -1.2000 -9.9700 -22.3048% -70.4594%
MTAC_Yeast_Standard_3min 5.4300 12.0300 4.0700 -1.3600 -7.9600 -25.0460% -66.1679%
MTAC_Yeast_Standard_5min 5.5500 6.7100 4.3200 -1.2300 -2.3900 -22.1622% -35.6185%
Olsen_Astral_3P 76.4000 107.5900
Olsen_Exploris_3P 27.6600 40.6500
SCIEX_3P 30.2900 67.1700
SCP_Astral_1000pg_12ms 5.7900 6.3300 4.0200 -1.7700 -2.3100 -30.5699% -36.4929%
SCP_Astral_1000pg_24ms 6.2600 10.5600 4.2800 -1.9800 -6.2800 -31.6294% -59.4697%
SCP_Astral_1000pg_3ms 4.5200 7.5800 3.6800 -0.8400 -3.9000 -18.5841% -51.4512%
SCP_Astral_1000pg_6ms 5.7400 5.2100 3.5000 -2.2400 -1.7100 -39.0244% -32.8215%
SCP_Astral_10ng_12ms 7.0700 11.9600 5.4800 -1.5900 -6.4800 -22.4894% -54.1806%
SCP_Astral_10ng_24ms 7.5900 16.6600 5.7600 -1.8300 -10.9000 -24.1107% -65.4262%
SCP_Astral_10ng_6ms 7.3800 14.1000 5.0100 -2.3700 -9.0900 -32.1138% -64.4681%
SCP_Astral_10ng_ms 6.4500 8.9700 4.3000 -2.1500 -4.6700 -33.3333% -52.0624%
SCP_Astral_250pg_12ms 4.7400 5.8200 3.9100 -0.8300 -1.9100 -17.5105% -32.8179%
SCP_Astral_250pg_24ms 5.2600 5.9000 3.6100 -1.6500 -2.2900 -31.3688% -38.8136%
SCP_Astral_250pg_3ms 4.6500
SCP_Astral_250pg_6ms 4.1700 6.6300
SCP_Astral_500pg_12ms 5.2800 5.9100 3.4700 -1.8100 -2.4400 -34.2803% -41.2860%
SCP_Astral_500pg_24ms 5.5100 5.8000 3.8400 -1.6700 -1.9600 -30.3085% -33.7931%
SCP_Astral_500pg_3ms 4.7300 5.1300
SCP_Astral_500pg_6ms 4.6500 5.2400 3.4900 -1.1600 -1.7500 -24.9462% -33.3969%
SCP_Astral_MBR 9.0400 11.9500 6.3300 -2.7100 -5.6200 -29.9779% -47.0293%
Seer_Astral_45 100.3500 141.5700
Seer_Astral_single 17.2500
YEAST_KO_Astral 235.6300 564
EWZ_2P_MBR_Exploris 29 67.2800
Seer_Astral_45_Entrapment 799.8300
EWZ_2P_noMBR_Exploris 27.1100 41.9900