Regression Metrics Report

Versions: v0.6.4, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 5499336 9461755
KEAP1KO_Eclipse 1096494
MTAC_3P_Alternating 586322 644915 644915 +58593 +0 +9.9933% +0%
MTAC_3P_Standard 596590 653312
MTAC_Yeast_Alternating_3min 141629
MTAC_Yeast_Alternating_5min 155641 161312 161312 +5671 +0 +3.6436% +0%
MTAC_Yeast_Standard_3min 138509 144399
MTAC_Yeast_Standard_5min 158962 163293
Olsen_Astral_3P 3282083 3932594
Olsen_Exploris_3P 1022736
SCIEX_3P 672242
SCP_Astral_1000pg_12ms 40882 42889 42889 +2007 +0 +4.9093% +0%
SCP_Astral_1000pg_24ms 41069 42995
SCP_Astral_1000pg_3ms 8740 23283 23283 +14543 +0 +166.3959% +0%
SCP_Astral_1000pg_6ms 16935 17872 17872 +937 +0 +5.5329% +0%
SCP_Astral_10ng_12ms 99908 104674
SCP_Astral_10ng_24ms 71098 73391
SCP_Astral_10ng_6ms 115157 119850 119850 +4693 +0 +4.0753% +0%
SCP_Astral_10ng_ms 105704 108898 108898 +3194 +0 +3.0216% +0%
SCP_Astral_250pg_12ms 10194 10725
SCP_Astral_250pg_24ms 14807 15487
SCP_Astral_250pg_3ms 1261 1881
SCP_Astral_250pg_6ms 1436 4735 4735 +3299 +0 +229.7354% +0%
SCP_Astral_500pg_12ms 21710 22164
SCP_Astral_500pg_24ms 25860 26218 26218 +358 +0 +1.3844% +0%
SCP_Astral_500pg_3ms 3484
SCP_Astral_500pg_6ms 10699 11408
SCP_Astral_MBR 92167 95835
Seer_Astral_45 2512737 3376226
YEAST_KO_Astral 16088274 21174442
EWZ_2P_MBR_Exploris 1662994
EWZ_2P_noMBR_Exploris 1608906

Metric: identification.precursors.unique

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 246168 457335
KEAP1KO_Eclipse 111504
MTAC_3P_Alternating 108267 118194 118194 +9927 +0 +9.1690% +0%
MTAC_3P_Standard 110265 119873
MTAC_Yeast_Alternating_3min 49057
MTAC_Yeast_Alternating_5min 53969 55582 55582 +1613 +0 +2.9888% +0%
MTAC_Yeast_Standard_3min 48621 50308
MTAC_Yeast_Standard_5min 55060 56182
Olsen_Astral_3P 198770 232128
Olsen_Exploris_3P 51272
SCIEX_3P 82206
SCP_Astral_1000pg_12ms 14440 15150 15150 +710 +0 +4.9169% +0%
SCP_Astral_1000pg_24ms 14483 15034
SCP_Astral_1000pg_3ms 8740 9410 9410 +670 +0 +7.6659% +0%
SCP_Astral_1000pg_6ms 8898 9308 9308 +410 +0 +4.6078% +0%
SCP_Astral_10ng_12ms 34865 36461
SCP_Astral_10ng_24ms 24649 25349
SCP_Astral_10ng_6ms 40156 41645 41645 +1489 +0 +3.7080% +0%
SCP_Astral_10ng_ms 36688 37808 37808 +1120 +0 +3.0528% +0%
SCP_Astral_250pg_12ms 3666 3871
SCP_Astral_250pg_24ms 5299 5531
SCP_Astral_250pg_3ms 675 701
SCP_Astral_250pg_6ms 1436 1713 1713 +277 +0 +19.2897% +0%
SCP_Astral_500pg_12ms 7794 7969
SCP_Astral_500pg_24ms 9158 9228 9228 +70 +0 +0.7644% +0%
SCP_Astral_500pg_3ms 1846
SCP_Astral_500pg_6ms 3874 4136
SCP_Astral_MBR 24110 24950
Seer_Astral_45 69584 90265
YEAST_KO_Astral 66823 88289
EWZ_2P_MBR_Exploris 50700
EWZ_2P_noMBR_Exploris 50591

Metric: identification.protein_groups.total

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 603278 858689
KEAP1KO_Eclipse 87920
MTAC_3P_Alternating 63773 65575 65575 +1802 +0 +2.8256% +0%
MTAC_3P_Standard 64317 66287
MTAC_Yeast_Alternating_3min 12170
MTAC_Yeast_Alternating_5min 12432 12546 12546 +114 +0 +0.9170% +0%
MTAC_Yeast_Standard_3min 12008 12121
MTAC_Yeast_Standard_5min 12561 12572
Olsen_Astral_3P 236395 251306
Olsen_Exploris_3P 146224
SCIEX_3P 70810
SCP_Astral_1000pg_12ms 9163 9569 9569 +406 +0 +4.4309% +0%
SCP_Astral_1000pg_24ms 9298 9833
SCP_Astral_1000pg_3ms 2450 6359 6359 +3909 +0 +159.5510% +0%
SCP_Astral_1000pg_6ms 4703 4846 4846 +143 +0 +3.0406% +0%
SCP_Astral_10ng_12ms 16190 16341
SCP_Astral_10ng_24ms 13599 13726
SCP_Astral_10ng_6ms 17017 17319 17319 +302 +0 +1.7747% +0%
SCP_Astral_10ng_ms 16252 16211 16211 -41 +0 -0.2523% +0%
SCP_Astral_250pg_12ms 3647 3768
SCP_Astral_250pg_24ms 4300 4707
SCP_Astral_250pg_3ms 576 725
SCP_Astral_250pg_6ms 637 2045 2045 +1408 +0 +221.0361% +0%
SCP_Astral_500pg_12ms 6245 5980
SCP_Astral_500pg_24ms 6722 6557 6557 -165 +0 -2.4546% +0%
SCP_Astral_500pg_3ms 982
SCP_Astral_500pg_6ms 3708 3661
SCP_Astral_MBR 20165 20474
Seer_Astral_45 225377 252139
YEAST_KO_Astral 1300836 1403100
EWZ_2P_MBR_Exploris 239484
EWZ_2P_noMBR_Exploris 235990

Metric: identification.protein_groups.unique

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 21740 30403
KEAP1KO_Eclipse 7845
MTAC_3P_Alternating 11361 11544 11544 +183 +0 +1.6108% +0%
MTAC_3P_Standard 11473 11687
MTAC_Yeast_Alternating_3min 4121
MTAC_Yeast_Alternating_5min 4215 4239 4239 +24 +0 +0.5694% +0%
MTAC_Yeast_Standard_3min 4075 4112
MTAC_Yeast_Standard_5min 4249 4240
Olsen_Astral_3P 13820 14472
Olsen_Exploris_3P 7255
SCIEX_3P 8652
SCP_Astral_1000pg_12ms 3245 3387 3387 +142 +0 +4.3760% +0%
SCP_Astral_1000pg_24ms 3254 3490
SCP_Astral_1000pg_3ms 2450 2463 2463 +13 +0 +0.5306% +0%
SCP_Astral_1000pg_6ms 2508 2505 2505 -3 +0 -0.1196% +0%
SCP_Astral_10ng_12ms 5579 5621
SCP_Astral_10ng_24ms 4721 4711
SCP_Astral_10ng_6ms 5846 5941 5941 +95 +0 +1.6250% +0%
SCP_Astral_10ng_ms 5611 5574 5574 -37 +0 -0.6594% +0%
SCP_Astral_250pg_12ms 1292 1349
SCP_Astral_250pg_24ms 1568 1729
SCP_Astral_250pg_3ms 307 260
SCP_Astral_250pg_6ms 637 730 730 +93 +0 +14.5997% +0%
SCP_Astral_500pg_12ms 2207 2104
SCP_Astral_500pg_24ms 2403 2343 2343 -60 +0 -2.4969% +0%
SCP_Astral_500pg_3ms 525
SCP_Astral_500pg_6ms 1318 1319
SCP_Astral_MBR 4708 4747
Seer_Astral_45 5802 6291
YEAST_KO_Astral 4565 4789
EWZ_2P_MBR_Exploris 6831
EWZ_2P_noMBR_Exploris 6858

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0006
MTAC_3P_Alternating_Entrapment -0.0005 -0.0004 -0.0004 +0.0001 +0
MTAC_3P_Standard_Entrapment -0.0014 -0.0007
MTAC_Yeast_Alternating_3min_Entrapment -0.0014
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0009
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0024
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0023
Olsen_Astral_3P_Entrapment -0.0015 -0.0012
Olsen_Exploris_3P_Entrapment -0.0002
SCIEX_3P_Entrapment -0.0005 0.0004
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0031 -0.0031 -0.0008 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0021
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0047 -0.0047 -0.0017 +0
SCP_Astral_1000pg_6ms_Entrapment -0.0002 0.0001 0.0001 +0.0003 +0
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0011
SCP_Astral_10ng_24ms_Entrapment -0.0020 -0.0001 -0.0020 +0.0001 -0.0018
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0020
SCP_Astral_10ng_6ms_Entrapment -0.0008 0.0000
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0020 -0.0020 +0.0019 +0
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0012 -0.0012 -0.0010 +0
SCP_Astral_250pg_6ms_Entrapment -0.0051
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0007 -0.0007 +0.0015 +0
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0047 -0.0047 -0.0034 +0
SCP_Astral_500pg_6ms_Entrapment -0.0042
SCP_Astral_MBR_Entrapment -0.0026 -0.0020
YEAST_KO_Astral_Entrapment -0.0024 -0.0019

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0010
MTAC_3P_Alternating_Entrapment -0.0010 -0.0010 -0.0010 +0.0000 +0
MTAC_3P_Standard_Entrapment -0.0013 -0.0026
MTAC_Yeast_Alternating_3min_Entrapment -0.0045
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0041
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0040
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0050
Olsen_Astral_3P_Entrapment -0.0041 -0.0028
Olsen_Exploris_3P_Entrapment -0.0029
SCIEX_3P_Entrapment -0.0031 -0.0029
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0069 -0.0069 -0.0019 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0054
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0067 -0.0067 -0.0007 +0
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0034 -0.0034 -0.0017 +0
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0050
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0034 -0.0032 +0.0000 +0.0002
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0045
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0039
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0078 -0.0078 -0.0025 +0
SCP_Astral_250pg_24ms_Entrapment -0.0042 0.0005 0.0005 +0.0047 +0
SCP_Astral_250pg_3ms_Entrapment -0.0028
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0051
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0044 -0.0044 -0.0008 +0
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0030 -0.0030 -0.0010 +0
SCP_Astral_500pg_3ms_Entrapment -0.0042 0.0144
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0068
SCP_Astral_MBR_Entrapment -0.0059 -0.0039
YEAST_KO_Astral_Entrapment -0.0065 -0.0059

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0005
MTAC_3P_Alternating_Entrapment -0.0001 -0.0000 -0.0000 +0.0001 +0
MTAC_3P_Standard_Entrapment -0.0009 -0.0003
MTAC_Yeast_Alternating_3min_Entrapment -0.0012
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0005
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0016
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0014
Olsen_Astral_3P_Entrapment -0.0008 -0.0007
Olsen_Exploris_3P_Entrapment -0.0004
SCIEX_3P_Entrapment -0.0005 0.0003
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0029 -0.0029 -0.0014 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0019
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0032 -0.0032 -0.0012 +0
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0005 -0.0005 -0.0006 +0
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0010
SCP_Astral_10ng_24ms_Entrapment -0.0014 -0.0002 -0.0020 -0.0006 -0.0018
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0016
SCP_Astral_10ng_6ms_Entrapment -0.0005 -0.0001
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0014 -0.0014 +0.0016 +0
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0011 -0.0011 -0.0004 +0
SCP_Astral_250pg_6ms_Entrapment -0.0037
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0013 -0.0013 +0.0005 +0
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0036 -0.0036 -0.0020 +0
SCP_Astral_500pg_6ms_Entrapment -0.0036
SCP_Astral_MBR_Entrapment -0.0017 -0.0014
YEAST_KO_Astral_Entrapment -0.0013 -0.0011

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0002
MTAC_3P_Alternating_Entrapment -0.0001 -0.0005 -0.0005 -0.0004 +0
MTAC_3P_Standard_Entrapment -0.0008 -0.0016
MTAC_Yeast_Alternating_3min_Entrapment -0.0034
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0035
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0034
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0037
Olsen_Astral_3P_Entrapment -0.0024 -0.0022
Olsen_Exploris_3P_Entrapment -0.0026
SCIEX_3P_Entrapment -0.0036 -0.0033
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0049 -0.0049 -0.0011 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0041
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0047 -0.0047 -0.0003 +0
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0033 -0.0033 -0.0009 +0
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0040
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0029 -0.0035 -0.0003 -0.0005
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0036
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0045
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0050 -0.0050 -0.0012 +0
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0003 -0.0003 +0.0010 +0
SCP_Astral_250pg_3ms_Entrapment -0.0060
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0044
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0040 -0.0040 -0.0000 +0
SCP_Astral_500pg_24ms_Entrapment -0.0019 -0.0037 -0.0037 -0.0017 +0
SCP_Astral_500pg_3ms_Entrapment -0.0032 0.0014
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0036
SCP_Astral_MBR_Entrapment -0.0024 -0.0028
YEAST_KO_Astral_Entrapment -0.0041 -0.0032

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476

keap1.precursors

Dataset Gene Run v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0

keap1.protein_groups

Dataset Gene Run v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0

Metric: cv.precursors.median_cv

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1512 0.1512 +0.0053 +0
MTAC_3P_Standard 0.1393 0.1451
MTAC_Yeast_Alternating_3min 0.1523
MTAC_Yeast_Alternating_5min 0.1531 0.1476 0.1476 -0.0054 +0
MTAC_Yeast_Standard_3min 0.1698 0.1706
MTAC_Yeast_Standard_5min 0.1503 0.1430
Olsen_Astral_3P 0.0823 0.0949
Olsen_Exploris_3P 0.1480
SCIEX_3P 0.1284

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0773 0.0773 +0.0010 +0
MTAC_3P_Standard 0.0723 0.0733
MTAC_Yeast_Alternating_3min 0.0687
MTAC_Yeast_Alternating_5min 0.0778 0.0615 0.0615 -0.0163 +0
MTAC_Yeast_Standard_3min 0.0792 0.0774
MTAC_Yeast_Standard_5min 0.0770 0.0586
Olsen_Astral_3P 0.0374 0.0392
Olsen_Exploris_3P 0.1028
SCIEX_3P 0.0864

fold_change.error.precursors

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0709 -0.0709 -0.0005 +0
MTAC_3P_Alternating human A vs B -0.0432 -0.0401 -0.0401 -0.0031 +0
MTAC_3P_Alternating yeast A vs B -0.0026 -0.0080 -0.0080 +0.0054 +0
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1255 +0.0010
MTAC_3P_Standard human A vs B -0.0785 -0.0742 -0.0043
MTAC_3P_Standard yeast A vs B -0.0337 -0.0332 -0.0005
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0614 +0.0043
Olsen_Astral_3P ecoli D vs C -0.2013 -0.1952 -0.0062
Olsen_Astral_3P ecoli F vs E 0.0193 -0.0248 +0.0055
Olsen_Astral_3P human B vs A -0.0036 -0.0080 +0.0043
Olsen_Astral_3P human D vs C -0.3258 -0.3336 +0.0078
Olsen_Astral_3P human F vs E 0.0777 0.0789 +0.0011
Olsen_Astral_3P yeast B vs A 0.0756 0.0647 -0.0109
Olsen_Astral_3P yeast D vs C -0.2263 -0.2408 +0.0145
Olsen_Astral_3P yeast F vs E 0.1940 0.1842 -0.0099
Olsen_Exploris_3P ecoli B vs A 0.2272
Olsen_Exploris_3P ecoli D vs C -0.0687
Olsen_Exploris_3P ecoli F vs E 0.2556
Olsen_Exploris_3P human B vs A 0.0955
Olsen_Exploris_3P human D vs C -0.0535
Olsen_Exploris_3P human F vs E 0.1998
Olsen_Exploris_3P yeast B vs A 0.0478
Olsen_Exploris_3P yeast D vs C -0.1076
Olsen_Exploris_3P yeast F vs E -0.0679
SCIEX_3P ecoli B vs A -0.0531
SCIEX_3P ecoli C vs A -0.0580
SCIEX_3P ecoli C vs B -0.0146
SCIEX_3P human B vs A -0.0334
SCIEX_3P human C vs A -0.0804
SCIEX_3P human C vs B -0.0484
SCIEX_3P yeast B vs A -0.0084
SCIEX_3P yeast C vs A -0.1064
SCIEX_3P yeast C vs B -0.0912

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0654 -0.0654 +0.0000 +0
MTAC_3P_Alternating human A vs B -0.0451 -0.0404 -0.0404 -0.0047 +0
MTAC_3P_Alternating yeast A vs B 0.0016 -0.0046 -0.0046 +0.0030 +0
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1255 +0.0011
MTAC_3P_Standard human A vs B -0.0772 -0.0729 -0.0043
MTAC_3P_Standard yeast A vs B -0.0322 -0.0309 -0.0014
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0608 +0.0155
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1614 -0.0000
Olsen_Astral_3P ecoli F vs E 0.0601 -0.0157 -0.0444
Olsen_Astral_3P human B vs A -0.0149 -0.0186 +0.0037
Olsen_Astral_3P human D vs C -0.2928 -0.3033 +0.0105
Olsen_Astral_3P human F vs E 0.0700 0.0714 +0.0014
Olsen_Astral_3P yeast B vs A 0.0543 0.0423 -0.0119
Olsen_Astral_3P yeast D vs C -0.1994 -0.2185 +0.0191
Olsen_Astral_3P yeast F vs E 0.1690 0.1579 -0.0110
Olsen_Exploris_3P ecoli B vs A 0.2172
Olsen_Exploris_3P ecoli D vs C -0.0663
Olsen_Exploris_3P ecoli F vs E 0.2558
Olsen_Exploris_3P human B vs A 0.0841
Olsen_Exploris_3P human D vs C -0.0502
Olsen_Exploris_3P human F vs E 0.1988
Olsen_Exploris_3P yeast B vs A 0.0433
Olsen_Exploris_3P yeast D vs C -0.1095
Olsen_Exploris_3P yeast F vs E -0.0534
SCIEX_3P ecoli B vs A -0.0415
SCIEX_3P ecoli C vs A -0.0531
SCIEX_3P ecoli C vs B -0.0149
SCIEX_3P human B vs A -0.0318
SCIEX_3P human C vs A -0.0819
SCIEX_3P human C vs B -0.0489
SCIEX_3P yeast B vs A -0.0091
SCIEX_3P yeast C vs A -0.1151
SCIEX_3P yeast C vs B -0.1020

fold_change.variance.precursors

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.3047 0.3047 +0.0428 +0
MTAC_3P_Alternating human A vs B 0.1984 0.2118 0.2118 +0.0134 +0
MTAC_3P_Alternating yeast A vs B 0.2558 0.2690 0.2690 +0.0132 +0
MTAC_3P_Standard ecoli A vs B 0.2681 0.3102 +0.0421
MTAC_3P_Standard human A vs B 0.2062 0.2227 +0.0165
MTAC_3P_Standard yeast A vs B 0.2555 0.2704 +0.0150
Olsen_Astral_3P ecoli B vs A 0.5438 0.6556 +0.1118
Olsen_Astral_3P ecoli D vs C 0.3566 0.3884 +0.0318
Olsen_Astral_3P ecoli F vs E 1.1682 1.5159 +0.3478
Olsen_Astral_3P human B vs A 0.2100 0.2504 +0.0404
Olsen_Astral_3P human D vs C 0.2930 0.3458 +0.0528
Olsen_Astral_3P human F vs E 0.3046 0.3436 +0.0389
Olsen_Astral_3P yeast B vs A 0.2937 0.3335 +0.0397
Olsen_Astral_3P yeast D vs C 0.2553 0.2832 +0.0279
Olsen_Astral_3P yeast F vs E 0.4774 0.5467 +0.0693
Olsen_Exploris_3P ecoli B vs A 0.5783
Olsen_Exploris_3P ecoli D vs C 0.1629
Olsen_Exploris_3P ecoli F vs E 0.8044
Olsen_Exploris_3P human B vs A 0.3372
Olsen_Exploris_3P human D vs C 0.1096
Olsen_Exploris_3P human F vs E 0.3024
Olsen_Exploris_3P yeast B vs A 0.6189
Olsen_Exploris_3P yeast D vs C 0.1498
Olsen_Exploris_3P yeast F vs E 1.0859
SCIEX_3P ecoli B vs A 0.5007
SCIEX_3P ecoli C vs A 0.5855
SCIEX_3P ecoli C vs B 0.1466
SCIEX_3P human B vs A 0.1942
SCIEX_3P human C vs A 0.2171
SCIEX_3P human C vs B 0.1705
SCIEX_3P yeast B vs A 0.2341
SCIEX_3P yeast C vs A 0.5719
SCIEX_3P yeast C vs B 0.4881

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1342 0.1342 +0.0047 +0
MTAC_3P_Alternating human A vs B 0.0731 0.0772 0.0772 +0.0041 +0
MTAC_3P_Alternating yeast A vs B 0.1300 0.1168 0.1168 -0.0132 +0
MTAC_3P_Standard ecoli A vs B 0.1320 0.1350 +0.0030
MTAC_3P_Standard human A vs B 0.0679 0.0676 -0.0003
MTAC_3P_Standard yeast A vs B 0.1262 0.1279 +0.0017
Olsen_Astral_3P ecoli B vs A 0.1924 0.2507 +0.0583
Olsen_Astral_3P ecoli D vs C 0.1089 0.1141 +0.0052
Olsen_Astral_3P ecoli F vs E 0.3405 0.5488 +0.2083
Olsen_Astral_3P human B vs A 0.0420 0.0482 +0.0062
Olsen_Astral_3P human D vs C 0.0549 0.0695 +0.0146
Olsen_Astral_3P human F vs E 0.0528 0.0599 +0.0071
Olsen_Astral_3P yeast B vs A 0.0563 0.0554 -0.0010
Olsen_Astral_3P yeast D vs C 0.0483 0.0475 -0.0007
Olsen_Astral_3P yeast F vs E 0.0959 0.1054 +0.0096
Olsen_Exploris_3P ecoli B vs A 0.2033
Olsen_Exploris_3P ecoli D vs C 0.0636
Olsen_Exploris_3P ecoli F vs E 0.4584
Olsen_Exploris_3P human B vs A 0.0646
Olsen_Exploris_3P human D vs C 0.0301
Olsen_Exploris_3P human F vs E 0.0759
Olsen_Exploris_3P yeast B vs A 0.2336
Olsen_Exploris_3P yeast D vs C 0.0715
Olsen_Exploris_3P yeast F vs E 0.5309
SCIEX_3P ecoli B vs A 0.2191
SCIEX_3P ecoli C vs A 0.2647
SCIEX_3P ecoli C vs B 0.0574
SCIEX_3P human B vs A 0.0657
SCIEX_3P human C vs A 0.0731
SCIEX_3P human C vs B 0.0556
SCIEX_3P yeast B vs A 0.1098
SCIEX_3P yeast C vs A 0.2938
SCIEX_3P yeast C vs B 0.2531

Metric: runtime

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 247.2300 236.7100
KEAP1KO_Eclipse 24.0700
MTAC_3P_Alternating 12.7500 12.1200 31.6700 +18.9200 +19.5500 +148.3922% +161.3036%
MTAC_3P_Standard 12.3100 14.0300
MTAC_Yeast_Alternating_3min 5.6600
MTAC_Yeast_Alternating_5min 5.3800 5.4900 8.1600 +2.7800 +2.6700 +51.6729% +48.6339%
MTAC_Yeast_Standard_3min 5.4300 5.4200
MTAC_Yeast_Standard_5min 5.5500 5.5700
Olsen_Astral_3P 76.4000 81.8500
Olsen_Exploris_3P 27.6600
SCIEX_3P 30.2900
SCP_Astral_1000pg_12ms 5.7900 5.5600 19.8500 +14.0600 +14.2900 +242.8325% +257.0144%
SCP_Astral_1000pg_24ms 6.2600 6.0200
SCP_Astral_1000pg_3ms 4.5200 5.0700
SCP_Astral_1000pg_6ms 5.7400 4.8400 9.3600 +3.6200 +4.5200 +63.0662% +93.3884%
SCP_Astral_10ng_12ms 7.0700 7.8500
SCP_Astral_10ng_24ms 7.5900 7.9600
SCP_Astral_10ng_6ms 7.3800 6.7800 9.8800 +2.5000 +3.1000 +33.8753% +45.7227%
SCP_Astral_10ng_ms 6.4500 7.8400
SCP_Astral_250pg_12ms 4.7400 4.6500
SCP_Astral_250pg_24ms 5.2600 5.0500
SCP_Astral_250pg_3ms 4.6500 4.9700
SCP_Astral_250pg_6ms 4.1700 4.5600 9.1900 +5.0200 +4.6300 +120.3837% +101.5351%
SCP_Astral_500pg_12ms 5.2800 4.9300
SCP_Astral_500pg_24ms 5.5100 5.3100 13.5000 +7.9900 +8.1900 +145.0091% +154.2373%
SCP_Astral_500pg_3ms 4.7300
SCP_Astral_500pg_6ms 4.6500 4.7100
SCP_Astral_MBR 9.0400 8.3800
Seer_Astral_45 100.3500 85.4900
YEAST_KO_Astral 235.6300 221.6300
EWZ_2P_MBR_Exploris 29
Seer_Astral_45_Entrapment 799.8300
EWZ_2P_noMBR_Exploris 27.1100

MTAC_3P_Alternating_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_3ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_10ng_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_500pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png