Regression Metrics Report

Versions: v0.6.4, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 5499336 9461755 9517985 +4018649 +56230 +73.0752% +0.5943%
KEAP1KO_Eclipse 1096494 1315482 +218988 +19.9717%
MTAC_3P_Alternating 586322 644915
MTAC_3P_Standard 596590 653312 653312 +56722 +0 +9.5077% +0%
MTAC_Yeast_Alternating_3min 141629 141567 -62 -0.0438%
MTAC_Yeast_Alternating_5min 155641 161312
MTAC_Yeast_Standard_3min 138509 144399
MTAC_Yeast_Standard_5min 158962 163293
Olsen_Astral_3P 3282083 3932594 3932594 +650511 +0 +19.8201% +0%
Olsen_Exploris_3P 1022736 1187335 +164599 +16.0940%
SCIEX_3P 672242 781118 +108876 +16.1960%
SCP_Astral_1000pg_12ms 40882 42889 42889 +2007 +0 +4.9093% +0%
SCP_Astral_1000pg_24ms 41069 42995 42995 +1926 +0 +4.6897% +0%
SCP_Astral_1000pg_3ms 8740 23283
SCP_Astral_1000pg_6ms 16935 17872 17872 +937 +0 +5.5329% +0%
SCP_Astral_10ng_12ms 99908 104674
SCP_Astral_10ng_24ms 71098 73391
SCP_Astral_10ng_6ms 115157 119850
SCP_Astral_10ng_ms 105704 108898
SCP_Astral_250pg_12ms 10194 10725
SCP_Astral_250pg_24ms 14807 15487
SCP_Astral_250pg_3ms 1261 1881
SCP_Astral_250pg_6ms 1436 4735 4735 +3299 +0 +229.7354% +0%
SCP_Astral_500pg_12ms 21710 22164
SCP_Astral_500pg_24ms 25860 26218
SCP_Astral_500pg_3ms 3484
SCP_Astral_500pg_6ms 10699 11408
SCP_Astral_MBR 92167 95835 95835 +3668 +0 +3.9797% +0%
Seer_Astral_45 2512737 3376226 3376226 +863489 +0 +34.3645% +0%
Seer_Astral_single 56252
YEAST_KO_Astral 16088274 21174442 21186122 +5097848 +11680 +31.6867% +0.0552%
EWZ_2P_MBR_Exploris 1662994 1846154 +183160 +11.0139%
EWZ_2P_noMBR_Exploris 1608906 1772922 +164016 +10.1943%

Metric: identification.precursors.unique

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 246168 457335 457322 +211154 -13 +85.7764% -0.0028%
KEAP1KO_Eclipse 111504 127728 +16224 +14.5502%
MTAC_3P_Alternating 108267 118194
MTAC_3P_Standard 110265 119873 119873 +9608 +0 +8.7136% +0%
MTAC_Yeast_Alternating_3min 49057 49046 -11 -0.0224%
MTAC_Yeast_Alternating_5min 53969 55582
MTAC_Yeast_Standard_3min 48621 50308
MTAC_Yeast_Standard_5min 55060 56182
Olsen_Astral_3P 198770 232128 232128 +33358 +0 +16.7822% +0%
Olsen_Exploris_3P 51272 58745 +7473 +14.5752%
SCIEX_3P 82206 93764 +11558 +14.0598%
SCP_Astral_1000pg_12ms 14440 15150 15150 +710 +0 +4.9169% +0%
SCP_Astral_1000pg_24ms 14483 15034 15034 +551 +0 +3.8045% +0%
SCP_Astral_1000pg_3ms 8740 9410
SCP_Astral_1000pg_6ms 8898 9308 9308 +410 +0 +4.6078% +0%
SCP_Astral_10ng_12ms 34865 36461
SCP_Astral_10ng_24ms 24649 25349
SCP_Astral_10ng_6ms 40156 41645
SCP_Astral_10ng_ms 36688 37808
SCP_Astral_250pg_12ms 3666 3871
SCP_Astral_250pg_24ms 5299 5531
SCP_Astral_250pg_3ms 675 701
SCP_Astral_250pg_6ms 1436 1713 1713 +277 +0 +19.2897% +0%
SCP_Astral_500pg_12ms 7794 7969
SCP_Astral_500pg_24ms 9158 9228
SCP_Astral_500pg_3ms 1846
SCP_Astral_500pg_6ms 3874 4136
SCP_Astral_MBR 24110 24950 24950 +840 +0 +3.4840% +0%
Seer_Astral_45 69584 90265 90265 +20681 +0 +29.7209% +0%
Seer_Astral_single 56252
YEAST_KO_Astral 66823 88289 88536 +21713 +247 +32.4933% +0.2798%
EWZ_2P_MBR_Exploris 50700 56361 +5661 +11.1657%
EWZ_2P_noMBR_Exploris 50591 56238 +5647 +11.1621%

Metric: identification.protein_groups.total

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 603278 858689 865519 +262241 +6830 +43.4693% +0.7954%
KEAP1KO_Eclipse 87920 94754 +6834 +7.7730%
MTAC_3P_Alternating 63773 65575
MTAC_3P_Standard 64317 66287 66287 +1970 +0 +3.0630% +0%
MTAC_Yeast_Alternating_3min 12170 12186 +16 +0.1315%
MTAC_Yeast_Alternating_5min 12432 12546
MTAC_Yeast_Standard_3min 12008 12121
MTAC_Yeast_Standard_5min 12561 12572
Olsen_Astral_3P 236395 251306 251306 +14911 +0 +6.3077% +0%
Olsen_Exploris_3P 146224 155373 +9149 +6.2568%
SCIEX_3P 70810 76507 +5697 +8.0455%
SCP_Astral_1000pg_12ms 9163 9569 9569 +406 +0 +4.4309% +0%
SCP_Astral_1000pg_24ms 9298 9833 9833 +535 +0 +5.7539% +0%
SCP_Astral_1000pg_3ms 2450 6359
SCP_Astral_1000pg_6ms 4703 4846 4846 +143 +0 +3.0406% +0%
SCP_Astral_10ng_12ms 16190 16341
SCP_Astral_10ng_24ms 13599 13726
SCP_Astral_10ng_6ms 17017 17319
SCP_Astral_10ng_ms 16252 16211
SCP_Astral_250pg_12ms 3647 3768
SCP_Astral_250pg_24ms 4300 4707
SCP_Astral_250pg_3ms 576 725
SCP_Astral_250pg_6ms 637 2045 2045 +1408 +0 +221.0361% +0%
SCP_Astral_500pg_12ms 6245 5980
SCP_Astral_500pg_24ms 6722 6557
SCP_Astral_500pg_3ms 982
SCP_Astral_500pg_6ms 3708 3661
SCP_Astral_MBR 20165 20474 20474 +309 +0 +1.5324% +0%
Seer_Astral_45 225377 252139 252139 +26762 +0 +11.8743% +0%
Seer_Astral_single 4706
YEAST_KO_Astral 1300836 1403100 1403332 +102496 +232 +7.8792% +0.0165%
EWZ_2P_MBR_Exploris 239484 249426 +9942 +4.1514%
EWZ_2P_noMBR_Exploris 235990 244345 +8355 +3.5404%

Metric: identification.protein_groups.unique

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 21740 30403 30279 +8539 -124 +39.2778% -0.4079%
KEAP1KO_Eclipse 7845 8099 +254 +3.2377%
MTAC_3P_Alternating 11361 11544
MTAC_3P_Standard 11473 11687 11687 +214 +0 +1.8652% +0%
MTAC_Yeast_Alternating_3min 4121 4126 +5 +0.1213%
MTAC_Yeast_Alternating_5min 4215 4239
MTAC_Yeast_Standard_3min 4075 4112
MTAC_Yeast_Standard_5min 4249 4240
Olsen_Astral_3P 13820 14472 14472 +652 +0 +4.7178% +0%
Olsen_Exploris_3P 7255 7602 +347 +4.7829%
SCIEX_3P 8652 9126 +474 +5.4785%
SCP_Astral_1000pg_12ms 3245 3387 3387 +142 +0 +4.3760% +0%
SCP_Astral_1000pg_24ms 3254 3490 3490 +236 +0 +7.2526% +0%
SCP_Astral_1000pg_3ms 2450 2463
SCP_Astral_1000pg_6ms 2508 2505 2505 -3 +0 -0.1196% +0%
SCP_Astral_10ng_12ms 5579 5621
SCP_Astral_10ng_24ms 4721 4711
SCP_Astral_10ng_6ms 5846 5941
SCP_Astral_10ng_ms 5611 5574
SCP_Astral_250pg_12ms 1292 1349
SCP_Astral_250pg_24ms 1568 1729
SCP_Astral_250pg_3ms 307 260
SCP_Astral_250pg_6ms 637 730 730 +93 +0 +14.5997% +0%
SCP_Astral_500pg_12ms 2207 2104
SCP_Astral_500pg_24ms 2403 2343
SCP_Astral_500pg_3ms 525
SCP_Astral_500pg_6ms 1318 1319
SCP_Astral_MBR 4708 4747 4747 +39 +0 +0.8284% +0%
Seer_Astral_45 5802 6291 6291 +489 +0 +8.4281% +0%
Seer_Astral_single 4706
YEAST_KO_Astral 4565 4789 4808 +243 +19 +5.3231% +0.3967%
EWZ_2P_MBR_Exploris 6831 7098 +267 +3.9087%
EWZ_2P_noMBR_Exploris 6858 7093 +235 +3.4267%

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0006 -0.0007 -0.0002
MTAC_3P_Alternating_Entrapment -0.0005 -0.0004
MTAC_3P_Standard_Entrapment -0.0014 -0.0007 -0.0007 +0.0007 +0
MTAC_Yeast_Alternating_3min_Entrapment -0.0014
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0009
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0024
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0023
Olsen_Astral_3P_Entrapment -0.0015 -0.0012 -0.0012 +0.0003 +0
Olsen_Exploris_3P_Entrapment -0.0002 -0.0006 -0.0004
SCIEX_3P_Entrapment -0.0005 0.0004 0.0001 +0.0007 -0.0003
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0031 -0.0031 -0.0008 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0021 -0.0021 +0.0033 +0
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0047
SCP_Astral_1000pg_6ms_Entrapment -0.0002 0.0001 0.0001 +0.0003 +0
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0011
SCP_Astral_10ng_24ms_Entrapment -0.0020 -0.0001
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0020
SCP_Astral_10ng_6ms_Entrapment -0.0008 0.0000
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0020 -0.0020 +0.0019 +0
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0012
SCP_Astral_250pg_6ms_Entrapment -0.0051
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0007
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0047
SCP_Astral_500pg_6ms_Entrapment -0.0042
SCP_Astral_MBR_Entrapment -0.0026 -0.0020 -0.0020 +0.0007 +0
YEAST_KO_Astral_Entrapment -0.0024 -0.0019 -0.0021 +0.0003 -0.0002

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0010 -0.0006 +0.0003
MTAC_3P_Alternating_Entrapment -0.0010 -0.0010
MTAC_3P_Standard_Entrapment -0.0013 -0.0026 -0.0026 -0.0013 +0
MTAC_Yeast_Alternating_3min_Entrapment -0.0045
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0041
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0040
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0050
Olsen_Astral_3P_Entrapment -0.0041 -0.0028 -0.0028 +0.0012 +0
Olsen_Exploris_3P_Entrapment -0.0029 -0.0014 +0.0015
SCIEX_3P_Entrapment -0.0031 -0.0029 -0.0034 -0.0003 -0.0005
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0069 -0.0069 -0.0019 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0054 -0.0054 +0.0016 +0
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0067
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0034 -0.0034 -0.0017 +0
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0050
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0034
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0045
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0039
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0078 -0.0078 -0.0025 +0
SCP_Astral_250pg_24ms_Entrapment -0.0042 0.0005
SCP_Astral_250pg_3ms_Entrapment -0.0028
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0051
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0044
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0030
SCP_Astral_500pg_3ms_Entrapment -0.0042 0.0144
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0068
SCP_Astral_MBR_Entrapment -0.0059 -0.0039 -0.0039 +0.0021 +0
YEAST_KO_Astral_Entrapment -0.0065 -0.0059 -0.0059 +0.0007 +0.0000

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0005 -0.0008 -0.0003
MTAC_3P_Alternating_Entrapment -0.0001 -0.0000
MTAC_3P_Standard_Entrapment -0.0009 -0.0003 -0.0003 +0.0006 +0
MTAC_Yeast_Alternating_3min_Entrapment -0.0012
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0005
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0016
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0014
Olsen_Astral_3P_Entrapment -0.0008 -0.0007 -0.0007 +0.0001 +0
Olsen_Exploris_3P_Entrapment -0.0004 0.0000 +0.0005
SCIEX_3P_Entrapment -0.0005 0.0003 0.0001 +0.0006 -0.0002
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0029 -0.0029 -0.0014 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0019 -0.0019 +0.0027 +0
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0032
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0005 -0.0005 -0.0006 +0
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0010
SCP_Astral_10ng_24ms_Entrapment -0.0014 -0.0002
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0016
SCP_Astral_10ng_6ms_Entrapment -0.0005 -0.0001
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0014 -0.0014 +0.0016 +0
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0011
SCP_Astral_250pg_6ms_Entrapment -0.0037
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0013
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0036
SCP_Astral_500pg_6ms_Entrapment -0.0036
SCP_Astral_MBR_Entrapment -0.0017 -0.0014 -0.0014 +0.0003 +0
YEAST_KO_Astral_Entrapment -0.0013 -0.0011 -0.0012 +0.0001 -0.0001

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris_Entrapment -0.0002 -0.0002 +0.0000
MTAC_3P_Alternating_Entrapment -0.0001 -0.0005
MTAC_3P_Standard_Entrapment -0.0008 -0.0016 -0.0016 -0.0007 +0
MTAC_Yeast_Alternating_3min_Entrapment -0.0034
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0035
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0034
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0037
Olsen_Astral_3P_Entrapment -0.0024 -0.0022 -0.0022 +0.0002 +0
Olsen_Exploris_3P_Entrapment -0.0026 -0.0004 +0.0023
SCIEX_3P_Entrapment -0.0036 -0.0033 -0.0035 +0.0001 -0.0002
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0049 -0.0049 -0.0011 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0041 -0.0041 +0.0008 +0
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0047
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0033 -0.0033 -0.0009 +0
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0040
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0029
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0036
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0045
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0050 -0.0050 -0.0012 +0
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0003
SCP_Astral_250pg_3ms_Entrapment -0.0060
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0044
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0040
SCP_Astral_500pg_24ms_Entrapment -0.0019 -0.0037
SCP_Astral_500pg_3ms_Entrapment -0.0032 0.0014
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0036
SCP_Astral_MBR_Entrapment -0.0024 -0.0028 -0.0028 -0.0005 +0
YEAST_KO_Astral_Entrapment -0.0041 -0.0032 -0.0035 +0.0007 -0.0003

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131 0.0170 +0.0039

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476 0.0302 -0.0174

keap1.precursors

Dataset Gene Run v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 2
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 4
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 15
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 14
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 15
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0

keap1.protein_groups

Dataset Gene Run v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0

Metric: cv.precursors.median_cv

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1512
MTAC_3P_Standard 0.1393 0.1451 0.1451 +0.0058 +0
MTAC_Yeast_Alternating_3min 0.1523 0.1521 -0.0002
MTAC_Yeast_Alternating_5min 0.1531 0.1476
MTAC_Yeast_Standard_3min 0.1698 0.1706
MTAC_Yeast_Standard_5min 0.1503 0.1430
Olsen_Astral_3P 0.0823 0.0949 0.0949 +0.0127 +0
Olsen_Exploris_3P 0.1480 0.1540 +0.0060
SCIEX_3P 0.1284 0.1417 +0.0133

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0773
MTAC_3P_Standard 0.0723 0.0733 0.0733 +0.0010 +0
MTAC_Yeast_Alternating_3min 0.0687 0.0692 +0.0005
MTAC_Yeast_Alternating_5min 0.0778 0.0615
MTAC_Yeast_Standard_3min 0.0792 0.0774
MTAC_Yeast_Standard_5min 0.0770 0.0586
Olsen_Astral_3P 0.0374 0.0392 0.0392 +0.0018 +0
Olsen_Exploris_3P 0.1028 0.1039 +0.0011
SCIEX_3P 0.0864 0.0914 +0.0050

fold_change.error.precursors

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0709 -0.0005
MTAC_3P_Alternating human A vs B -0.0432 -0.0401 -0.0031
MTAC_3P_Alternating yeast A vs B -0.0026 -0.0080 +0.0054
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1255 -0.1255 +0.0010 +0
MTAC_3P_Standard human A vs B -0.0785 -0.0742 -0.0742 -0.0043 +0
MTAC_3P_Standard yeast A vs B -0.0337 -0.0332 -0.0332 -0.0005 +0
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0614 -0.0614 +0.0043 +0
Olsen_Astral_3P ecoli D vs C -0.2013 -0.1952 -0.1952 -0.0062 +0
Olsen_Astral_3P ecoli F vs E 0.0193 -0.0248 -0.0248 +0.0055 +0
Olsen_Astral_3P human B vs A -0.0036 -0.0080 -0.0080 +0.0043 +0
Olsen_Astral_3P human D vs C -0.3258 -0.3336 -0.3336 +0.0078 +0
Olsen_Astral_3P human F vs E 0.0777 0.0789 0.0789 +0.0011 +0
Olsen_Astral_3P yeast B vs A 0.0756 0.0647 0.0647 -0.0109 +0
Olsen_Astral_3P yeast D vs C -0.2263 -0.2408 -0.2408 +0.0145 +0
Olsen_Astral_3P yeast F vs E 0.1940 0.1842 0.1842 -0.0099 +0
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2350
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0757
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2764
Olsen_Exploris_3P human B vs A 0.0955 0.1048
Olsen_Exploris_3P human D vs C -0.0535 -0.0552
Olsen_Exploris_3P human F vs E 0.1998 0.2115
Olsen_Exploris_3P yeast B vs A 0.0478 0.0393
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1120
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0850
SCIEX_3P ecoli B vs A -0.0531 -0.0603
SCIEX_3P ecoli C vs A -0.0580 -0.0532
SCIEX_3P ecoli C vs B -0.0146 -0.0000
SCIEX_3P human B vs A -0.0334 -0.0503
SCIEX_3P human C vs A -0.0804 -0.0854
SCIEX_3P human C vs B -0.0484 -0.0360
SCIEX_3P yeast B vs A -0.0084 -0.0326
SCIEX_3P yeast C vs A -0.1064 -0.1266
SCIEX_3P yeast C vs B -0.0912 -0.0838

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0654 +0.0000
MTAC_3P_Alternating human A vs B -0.0451 -0.0404 -0.0047
MTAC_3P_Alternating yeast A vs B 0.0016 -0.0046 +0.0030
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1255 -0.1255 +0.0011 +0
MTAC_3P_Standard human A vs B -0.0772 -0.0729 -0.0729 -0.0043 +0
MTAC_3P_Standard yeast A vs B -0.0322 -0.0309 -0.0309 -0.0014 +0
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0608 -0.0608 +0.0155 +0
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1614 -0.1614 -0.0000 +0
Olsen_Astral_3P ecoli F vs E 0.0601 -0.0157 -0.0157 -0.0444 +0
Olsen_Astral_3P human B vs A -0.0149 -0.0186 -0.0186 +0.0037 +0
Olsen_Astral_3P human D vs C -0.2928 -0.3033 -0.3033 +0.0105 +0
Olsen_Astral_3P human F vs E 0.0700 0.0714 0.0714 +0.0014 +0
Olsen_Astral_3P yeast B vs A 0.0543 0.0423 0.0423 -0.0119 +0
Olsen_Astral_3P yeast D vs C -0.1994 -0.2185 -0.2185 +0.0191 +0
Olsen_Astral_3P yeast F vs E 0.1690 0.1579 0.1579 -0.0110 +0
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2222
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0706
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3082
Olsen_Exploris_3P human B vs A 0.0841 0.0916
Olsen_Exploris_3P human D vs C -0.0502 -0.0527
Olsen_Exploris_3P human F vs E 0.1988 0.2097
Olsen_Exploris_3P yeast B vs A 0.0433 0.0424
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1155
Olsen_Exploris_3P yeast F vs E -0.0534 -0.1002
SCIEX_3P ecoli B vs A -0.0415 -0.0520
SCIEX_3P ecoli C vs A -0.0531 -0.0463
SCIEX_3P ecoli C vs B -0.0149 0.0017
SCIEX_3P human B vs A -0.0318 -0.0515
SCIEX_3P human C vs A -0.0819 -0.0875
SCIEX_3P human C vs B -0.0489 -0.0362
SCIEX_3P yeast B vs A -0.0091 -0.0407
SCIEX_3P yeast C vs A -0.1151 -0.1321
SCIEX_3P yeast C vs B -0.1020 -0.0930

fold_change.variance.precursors

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.3047 +0.0428
MTAC_3P_Alternating human A vs B 0.1984 0.2118 +0.0134
MTAC_3P_Alternating yeast A vs B 0.2558 0.2690 +0.0132
MTAC_3P_Standard ecoli A vs B 0.2681 0.3102 0.3102 +0.0421 +0
MTAC_3P_Standard human A vs B 0.2062 0.2227 0.2227 +0.0165 +0
MTAC_3P_Standard yeast A vs B 0.2555 0.2704 0.2704 +0.0150 +0
Olsen_Astral_3P ecoli B vs A 0.5438 0.6556 0.6556 +0.1118 +0
Olsen_Astral_3P ecoli D vs C 0.3566 0.3884 0.3884 +0.0318 +0
Olsen_Astral_3P ecoli F vs E 1.1682 1.5159 1.5159 +0.3478 +0
Olsen_Astral_3P human B vs A 0.2100 0.2504 0.2504 +0.0404 +0
Olsen_Astral_3P human D vs C 0.2930 0.3458 0.3458 +0.0528 +0
Olsen_Astral_3P human F vs E 0.3046 0.3436 0.3436 +0.0389 +0
Olsen_Astral_3P yeast B vs A 0.2937 0.3335 0.3335 +0.0397 +0
Olsen_Astral_3P yeast D vs C 0.2553 0.2832 0.2832 +0.0279 +0
Olsen_Astral_3P yeast F vs E 0.4774 0.5467 0.5467 +0.0693 +0
Olsen_Exploris_3P ecoli B vs A 0.5783 0.6276
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1602
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8994
Olsen_Exploris_3P human B vs A 0.3372 0.3712
Olsen_Exploris_3P human D vs C 0.1096 0.1176
Olsen_Exploris_3P human F vs E 0.3024 0.3254
Olsen_Exploris_3P yeast B vs A 0.6189 0.6764
Olsen_Exploris_3P yeast D vs C 0.1498 0.1799
Olsen_Exploris_3P yeast F vs E 1.0859 1.1552
SCIEX_3P ecoli B vs A 0.5007 0.5333
SCIEX_3P ecoli C vs A 0.5855 0.6205
SCIEX_3P ecoli C vs B 0.1466 0.1546
SCIEX_3P human B vs A 0.1942 0.2075
SCIEX_3P human C vs A 0.2171 0.2342
SCIEX_3P human C vs B 0.1705 0.1846
SCIEX_3P yeast B vs A 0.2341 0.2394
SCIEX_3P yeast C vs A 0.5719 0.6038
SCIEX_3P yeast C vs B 0.4881 0.5638

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 develop current Δ develop vs v0.6.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1342 +0.0047
MTAC_3P_Alternating human A vs B 0.0731 0.0772 +0.0041
MTAC_3P_Alternating yeast A vs B 0.1300 0.1168 -0.0132
MTAC_3P_Standard ecoli A vs B 0.1320 0.1350 0.1350 +0.0030 +0
MTAC_3P_Standard human A vs B 0.0679 0.0676 0.0676 -0.0003 +0
MTAC_3P_Standard yeast A vs B 0.1262 0.1279 0.1279 +0.0017 +0
Olsen_Astral_3P ecoli B vs A 0.1924 0.2507 0.2507 +0.0583 +0
Olsen_Astral_3P ecoli D vs C 0.1089 0.1141 0.1141 +0.0052 +0
Olsen_Astral_3P ecoli F vs E 0.3405 0.5488 0.5488 +0.2083 +0
Olsen_Astral_3P human B vs A 0.0420 0.0482 0.0482 +0.0062 +0
Olsen_Astral_3P human D vs C 0.0549 0.0695 0.0695 +0.0146 +0
Olsen_Astral_3P human F vs E 0.0528 0.0599 0.0599 +0.0071 +0
Olsen_Astral_3P yeast B vs A 0.0563 0.0554 0.0554 -0.0010 +0
Olsen_Astral_3P yeast D vs C 0.0483 0.0475 0.0475 -0.0007 +0
Olsen_Astral_3P yeast F vs E 0.0959 0.1054 0.1054 +0.0096 +0
Olsen_Exploris_3P ecoli B vs A 0.2033 0.2515
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0583
Olsen_Exploris_3P ecoli F vs E 0.4584 0.4636
Olsen_Exploris_3P human B vs A 0.0646 0.0700
Olsen_Exploris_3P human D vs C 0.0301 0.0326
Olsen_Exploris_3P human F vs E 0.0759 0.0703
Olsen_Exploris_3P yeast B vs A 0.2336 0.2410
Olsen_Exploris_3P yeast D vs C 0.0715 0.0907
Olsen_Exploris_3P yeast F vs E 0.5309 0.3966
SCIEX_3P ecoli B vs A 0.2191 0.2396
SCIEX_3P ecoli C vs A 0.2647 0.2449
SCIEX_3P ecoli C vs B 0.0574 0.0641
SCIEX_3P human B vs A 0.0657 0.0776
SCIEX_3P human C vs A 0.0731 0.0791
SCIEX_3P human C vs B 0.0556 0.0620
SCIEX_3P yeast B vs A 0.1098 0.0828
SCIEX_3P yeast C vs A 0.2938 0.2580
SCIEX_3P yeast C vs B 0.2531 0.2548

Metric: runtime

Dataset v0.6.4 develop current Δ current vs v0.6.4 Δ current vs develop % current vs v0.6.4 % current vs develop
APMS_Astral 247.2300 236.7100 522.3100 +275.0800 +285.6000 +111.2648% +120.6540%
KEAP1KO_Eclipse 24.0700 53.7100 +29.6400 +123.1408%
MTAC_3P_Alternating 12.7500 12.1200
MTAC_3P_Standard 12.3100 14.0300 22.1000 +9.7900 +8.0700 +79.5288% +57.5196%
MTAC_Yeast_Alternating_3min 5.6600 12.2200 +6.5600 +115.9011%
MTAC_Yeast_Alternating_5min 5.3800 5.4900
MTAC_Yeast_Standard_3min 5.4300 5.4200
MTAC_Yeast_Standard_5min 5.5500 5.5700
Olsen_Astral_3P 76.4000 81.8500 149.2800 +72.8800 +67.4300 +95.3927% +82.3824%
Olsen_Exploris_3P 27.6600 64.1600 +36.5000 +131.9595%
SCIEX_3P 30.2900 100.0500 +69.7600 +230.3070%
SCP_Astral_1000pg_12ms 5.7900 5.5600 12.0100 +6.2200 +6.4500 +107.4266% +116.0072%
SCP_Astral_1000pg_24ms 6.2600 6.0200 16.0400 +9.7800 +10.0200 +156.2300% +166.4452%
SCP_Astral_1000pg_3ms 4.5200 5.0700
SCP_Astral_1000pg_6ms 5.7400 4.8400 6.8100 +1.0700 +1.9700 +18.6411% +40.7025%
SCP_Astral_10ng_12ms 7.0700 7.8500
SCP_Astral_10ng_24ms 7.5900 7.9600
SCP_Astral_10ng_6ms 7.3800 6.7800
SCP_Astral_10ng_ms 6.4500 7.8400
SCP_Astral_250pg_12ms 4.7400 4.6500
SCP_Astral_250pg_24ms 5.2600 5.0500
SCP_Astral_250pg_3ms 4.6500 4.9700
SCP_Astral_250pg_6ms 4.1700 4.5600 9.6200 +5.4500 +5.0600 +130.6954% +110.9649%
SCP_Astral_500pg_12ms 5.2800 4.9300
SCP_Astral_500pg_24ms 5.5100 5.3100
SCP_Astral_500pg_3ms 4.7300
SCP_Astral_500pg_6ms 4.6500 4.7100
SCP_Astral_MBR 9.0400 8.3800 47.5400 +38.5000 +39.1600 +425.8850% +467.3031%
Seer_Astral_45 100.3500 85.4900 147.0500 +46.7000 +61.5600 +46.5371% +72.0084%
Seer_Astral_single 9.6200
YEAST_KO_Astral 235.6300 221.6300 401.5000 +165.8700 +179.8700 +70.3943% +81.1578%
EWZ_2P_MBR_Exploris 29 59.1700 +30.1700 +104.0345%
Seer_Astral_45_Entrapment 799.8300
EWZ_2P_noMBR_Exploris 27.1100 55.0900 +27.9800 +103.2091%

EWZ_2P_MBR_Exploris_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

MTAC_3P_Standard_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

Olsen_Astral_3P_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

Olsen_Exploris_3P_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCIEX_3P_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_24ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_1000pg_6ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_250pg_12ms_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

SCP_Astral_MBR_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png

YEAST_KO_Astral_Entrapment

efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_global_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_MBR_boosted_prec_prob.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png